Rroxscaffold_5G00337360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000782
Physical Location & Seq
Reverse (-)
5442431 .. 5446378
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337360.1

Sequence Viewer

Length: 405 bp
ATGGCACCAAAGAGTATCACAAGAGGGATGAAGAGAGTGTTAGAGCAATGTGCTGTTGACAGTTATGATATTAAACGGAGAAGTCAGCAAAGAACAACAAAATGTGATCGTGCTTCTTCTGGTGAAGATAAATGTGATCAAGTTAGTTCAAGGAGATACAAAAGAATGTCTCATGTAGAGTTTGGTCAAGCATCGAATCAATATCAAAATGTCATTGCACCTGAGCATTGTGAGAGACAATCTATGGATGGCAACGAAATTGATAGTCCAGCTGTAGATGAACATCGATTTATGATCAGTGAAGGTCGATGCTCGCATTCAGCTGGTCAGGCGGCATATCAAAGAAGCAAGCAAGGTCTTTCGCATAAAGTTTTTGAACTATCATTTTGGAAGAATAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.39

Weight (kDa)

9.06

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 332
AgsI TTSAA 2 cut(s) 150, 377
AluBI AGCT 2 cut(s) 272, 323
AluI AGCT 2 cut(s) 272, 323
Alw26I GTCTC 2 cut(s) 174, 229
AsuHPI GGTGA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 242
BclI TGATCA 2 cut(s) 136, 294
BcoDI GTCTC 2 cut(s) 174, 229
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 200, 299
Bpu10I CCTNAGC 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 53, 213
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 286
BseGI GGATG 2 cut(s) 33, 253
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 2 cut(s) 53, 213
BseMII CTCAG 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 174, 229
BsmI GAATGC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 106, 136, 294
BspACI CCGC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 53, 213
BssMI GATC 3 cut(s) 106, 136, 294
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 314, 350
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 33, 253
BstKTI GATC 3 cut(s) 109, 139, 297
BstMAI GTCTC 2 cut(s) 174, 229
BstMBI GATC 3 cut(s) 106, 136, 294
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 286
BtsCI GGATG 2 cut(s) 33, 253
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 314, 350
ClaI ATCGAT 1 cut(s) 286
CviAII CATG 1 cut(s) 173
CviJI RGCY 2 cut(s) 272, 323
CviKI_1 RGCY 2 cut(s) 272, 323
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 108, 138, 296
DpnII GATC 3 cut(s) 106, 136, 294
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
FaeI CATG 1 cut(s) 176
FaiI YATR 6 cut(s) 66, 174, 245, 293, 337, 366
FatI CATG 1 cut(s) 172
FbaI TGATCA 2 cut(s) 136, 294
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 2 cut(s) 40, 260
Fsp4HI GCNGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 333
Hin1II CATG 1 cut(s) 176
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 196
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 136, 294
Kzo9I GATC 3 cut(s) 106, 136, 294
LpnPI CCDG 5 cut(s) 105, 234, 282, 309, 314
LweI GCATC 2 cut(s) 200, 299
MalI GATC 3 cut(s) 108, 138, 296
MboI GATC 3 cut(s) 106, 136, 294
MboII GAAGA 4 cut(s) 43, 108, 137, 403
MluCI AATT 1 cut(s) 258
MnlI CCTC 1 cut(s) 17
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 272, 323
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 3 cut(s) 106, 136, 294
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 6
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 6
PvuII CAGCTG 2 cut(s) 272, 323
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 106, 136, 294
SetI ASST 5 cut(s) 223, 274, 307, 325, 358
SfaNI GCATC 2 cut(s) 200, 299
SfcI CTRYAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 332
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 194, 286, 307
TasI AATT 1 cut(s) 258
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 44, 294
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.