RchiOBHm_Chr2g0125261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000782
Physical Location & Seq
Reverse (-)
38843927 .. 38845447
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49738

Sequence Viewer

Length: 720 bp
ATGAAAAGATTATCAGAGCAGTCAGCTGCTGAAATGAGGGGATTTGATCGTGTTAGGTCTAAGAGGTGGACAACAATGTTTGATCAGCGAATTGTTGGAACATCAAGTCAACTTGAAAATGTAGATGCATCTGAACACAGTGAGAATGAAGTTAGGGGTGGTGATGAAAATACCATTGCAGGTGTAAATGCATTTGACGCTGCAGAGATTACACGAAGTAGCACGATGAGAAGAATGAAAAGATTGTTACAACAATGTGCTACTGAAAATTATGAAATTGGAGGGACAGTTGACCAAGGAAGAGCTGAATCCAATTGCATGTTGAGAATGAAGACATTGTCAGACCAGTCTGCTGTTGAAAATTCTGAAAGTGGAAACAAAGTTCATCAACGAAGAAGTGAATTTAATCCTGTGAGATCTAAGAGGTGGAGAAGAATGTTTGATTCACACATTGGTGAAGGATCAAGTCAACGTCAAAATCTGGATGCAGCTGAATATAGTGATGATCAATTTACAAGCGATCATTTACAAAATATTGTTATTGAGGAGGCAGAGGTGGCATCAAACAGGATGACAAGGAGAATGAGCAGATTGTTACGGCATGGTTGTGCTGAAAATTACAGAATTGGAGAAACAATTGAGCAAGGAAGAATTGAATCTAATCGTATGTGCTCTACACAACTGATTTATATCAATAATGTTAGCAAAAATAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.41

Weight (kDa)

6.98

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 469
AcsI RAATTY 2 cut(s) 361, 401
AgsI TTSAA 3 cut(s) 116, 359, 656
AleI CACNNNNGTG 1 cut(s) 453
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 26, 305, 491
AluI AGCT 3 cut(s) 26, 305, 491
Alw21I GWGCWC 1 cut(s) 674
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 26, 200, 488
ApoI RAATTY 2 cut(s) 361, 401
AsuHPI GGTGA 2 cut(s) 173, 467
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 674
BbvI GCAGC 3 cut(s) 13, 187, 500
BceAI ACGGC 1 cut(s) 614
BclI TGATCA 2 cut(s) 82, 505
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 170
BglII AGATCT 1 cut(s) 416
BisI GCNGC 3 cut(s) 27, 201, 489
BlsI GCNGC 3 cut(s) 28, 202, 490
BmsI GCATC 4 cut(s) 115, 137, 475, 569
BpiI GAAGAC 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 689
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 490, 576
BseJI GATNNNNATC 1 cut(s) 689
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 3 cut(s) 13, 187, 500
BsiHKAI GWGCWC 1 cut(s) 674
BslFI GGGAC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 6 cut(s) 46, 82, 416, 461, 505, 520
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 6 cut(s) 46, 82, 416, 461, 505, 520
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 140, 289
Bst6I CTCTTC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 60, 420
BstF5I GGATG 2 cut(s) 490, 576
BstKTI GATC 6 cut(s) 49, 85, 419, 464, 508, 523
BstMBI GATC 6 cut(s) 46, 82, 416, 461, 505, 520
BstMWI GCNNNNNNNGC 2 cut(s) 197, 557
BstNSI RCATGY 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 13, 187, 500
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BtsCI GGATG 2 cut(s) 490, 576
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 170
CaiI CAGNNNCTG 1 cut(s) 29
CseI GACGC 1 cut(s) 206
CviAII CATG 2 cut(s) 319, 602
CviJI RGCY 3 cut(s) 26, 305, 491
CviKI_1 RGCY 3 cut(s) 26, 305, 491
DdeI CTNAG 2 cut(s) 60, 420
DpnI GATC 6 cut(s) 48, 84, 418, 463, 507, 522
DpnII GATC 6 cut(s) 46, 82, 416, 461, 505, 520
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 295
EcoT22I ATGCAT 2 cut(s) 130, 193
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 322, 605
FaiI YATR 6 cut(s) 273, 320, 498, 603, 668, 690
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 318, 601
FbaI TGATCA 2 cut(s) 82, 505
Fnu4HI GCNGC 3 cut(s) 27, 201, 489
FokI GGATG 2 cut(s) 497, 583
Fsp4HI GCNGC 3 cut(s) 27, 201, 489
GluI GCNGC 3 cut(s) 27, 201, 489
HgaI GACGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 322, 605
HincII GTYRAC 3 cut(s) 110, 292, 470
HindII GTYRAC 3 cut(s) 110, 292, 470
HinfI GANTC 3 cut(s) 308, 443, 656
HphI GGTGA 2 cut(s) 173, 467
Hpy166II GTNNAC 4 cut(s) 69, 110, 292, 470
Hpy188I TCNGA 4 cut(s) 16, 133, 343, 367
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 4 cut(s) 69, 110, 292, 470
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 140, 289
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 6 cut(s) 128, 179, 191, 203, 318, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 557
HpyF3I CTNAG 2 cut(s) 60, 420
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 2 cut(s) 322, 605
Ksp22I TGATCA 2 cut(s) 82, 505
Kzo9I GATC 6 cut(s) 46, 82, 416, 461, 505, 520
LguI GCTCTTC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 165, 359, 423, 467, 553
Lsp1109I GCAGC 3 cut(s) 13, 187, 500
LweI GCATC 4 cut(s) 115, 137, 475, 569
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 2 cut(s) 246, 594
MalI GATC 6 cut(s) 48, 84, 418, 463, 507, 522
MboI GATC 6 cut(s) 46, 82, 416, 461, 505, 520
MboII GAAGA 6 cut(s) 243, 312, 343, 405, 444, 660
MfeI CAATTG 2 cut(s) 313, 636
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 7 cut(s) 30, 57, 275, 417, 538, 541, 547
Mph1103I ATGCAT 2 cut(s) 130, 193
MseI TTAA 2 cut(s) 405, 718
MslI CAYNNNNRTG 2 cut(s) 453, 606
MspA1I CMGCKG 2 cut(s) 26, 491
MunI CAATTG 2 cut(s) 313, 636
MwoI GCNNNNNNNGC 2 cut(s) 197, 557
NdeII GATC 6 cut(s) 46, 82, 416, 461, 505, 520
NlaIII CATG 2 cut(s) 322, 605
NsiI ATGCAT 2 cut(s) 130, 193
NspI RCATGY 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 453
PaqCI CACCTGC 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 308, 443, 656
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 3 cut(s) 28, 202, 490
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 26, 491
RseI CAYNNNNRTG 2 cut(s) 453, 606
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 405, 718
SatI GCNGC 3 cut(s) 27, 201, 489
Sau3AI GATC 6 cut(s) 46, 82, 416, 461, 505, 520
SduI GDGCHC 1 cut(s) 674
SetI ASST 9 cut(s) 28, 59, 68, 184, 307, 428, 475, 493, 558
SfaNI GCATC 4 cut(s) 115, 137, 475, 569
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 453, 606
SspI AATATT 1 cut(s) 535
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 140, 289
TaiI ACGT 1 cut(s) 475
TfiI GAWTC 3 cut(s) 308, 443, 656
Tru1I TTAA 2 cut(s) 405, 718
Tru9I TTAA 2 cut(s) 405, 718
TscAI CASTG 1 cut(s) 145
TseI GCWGC 3 cut(s) 26, 200, 488
TspDTI ATGAA 7 cut(s) 17, 162, 180, 251, 288, 344, 374
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 337
XapI RAATTY 2 cut(s) 361, 401
XceI RCATGY 1 cut(s) 322
Zsp2I ATGCAT 2 cut(s) 130, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.