Rh7AG302500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000782
Physical Location & Seq
Forward (+)
33258918 .. 33260648
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG302500.1

Sequence Viewer

Length: 540 bp
ATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCGTCTTATCTCTAAGAGGTTTAGAGCAATGTTGCATTCGCTCATCGTTGAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGAGATTGGACGAAAGCGCACATTGAGGAGAAAGAAGACATTGTCAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTAATCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGGTAGAATTGAATCTCATTGTATGTGCTCTACACCATTGATTTATATTGACAATGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

6.45

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AclWI GGATC 2 cut(s) 76, 328
AgsI TTSAA 5 cut(s) 125, 133, 161, 317, 488
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 2 cut(s) 257, 458
AlwI GGATC 2 cut(s) 76, 328
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 224, 429
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 257, 458
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 224, 429
BsaJI CCNNGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 257, 458
BsmI GAATGC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 4 cut(s) 68, 73, 320, 337
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 2 cut(s) 76, 328
BspT107I GGYRCC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 4 cut(s) 68, 73, 320, 337
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 87, 141
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 4 cut(s) 71, 76, 323, 340
BstMAI GTCTC 2 cut(s) 257, 458
BstMBI GATC 4 cut(s) 68, 73, 320, 337
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 224, 429
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 1 cut(s) 385
CfoI GCGC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 87, 141
DpnI GATC 4 cut(s) 70, 75, 322, 339
DpnII GATC 4 cut(s) 68, 73, 320, 337
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 157
FaiI YATR 3 cut(s) 165, 500, 522
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 54
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 201
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HinfI GANTC 2 cut(s) 325, 488
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 5 cut(s) 73, 144, 229, 307, 442
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 3 cut(s) 109, 155, 254
HpyF3I CTNAG 2 cut(s) 87, 141
HpySE526I ACGT 1 cut(s) 331
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 4 cut(s) 68, 73, 320, 337
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 142
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 332, 370
MalI GATC 4 cut(s) 70, 75, 322, 339
MboI GATC 4 cut(s) 68, 73, 320, 337
MboII GAAGA 6 cut(s) 17, 43, 229, 291, 429, 430
MfeI CAATTG 3 cut(s) 255, 267, 468
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 506
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 6 cut(s) 12, 84, 150, 201, 370, 402
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 428
MunI CAATTG 3 cut(s) 255, 267, 468
Mva1269I GAATGC 1 cut(s) 109
NdeII GATC 4 cut(s) 68, 73, 320, 337
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 157
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 488
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 68
PsyI GACNNNGTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 68, 73, 320, 337
SchI GAGTC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 506
SetI ASST 4 cut(s) 95, 142, 334, 481
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 7 cut(s) 287, 336, 344, 388, 398, 445, 488
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 323
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 6 cut(s) 44, 150, 189, 290, 369, 431
Tth111I GACNNNGTC 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.