Rh7DG406700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000782
Physical Location & Seq
Reverse (-)
56805783 .. 56812067
6285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG406700.1

Sequence Viewer

Length: 354 bp
ATGGTTATAGTGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGGAGAGCTAACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGTACGCAATCTTTATCCATTTTATCTTTTGGACCAGCAGCGTCAAAAGAGAGCCAAACTTTGTCCAATTCCGAATCTACAAATGATCATTCGCTATTTCTGCAAACGGATGATACCAGAGTCAACGGAAGCAATTGAGAAGAGACCCAGTACATCTCTCCAGTTATGGTTGCAATTTGTTTCCGGTTCCATCTCATTTGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.55

Weight (kDa)

5.37

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 11, 122
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 150, 298
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 68, 347
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 2 cut(s) 11, 122
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 344
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 64, 294, 307
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 64, 294, 307
BseXI GCAGC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 16, 127, 231
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 2 cut(s) 11, 122
BspTNI GGTCTC 1 cut(s) 283
BsrI ACTGG 3 cut(s) 64, 294, 307
BssMI GATC 3 cut(s) 16, 127, 231
Bst6I CTCTTC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 3 cut(s) 19, 130, 234
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 3 cut(s) 16, 127, 231
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 149, 297
CviJI RGCY 2 cut(s) 92, 200
CviKI_1 RGCY 2 cut(s) 92, 200
CviQI GTAC 2 cut(s) 149, 297
DpnI GATC 3 cut(s) 18, 129, 233
DpnII GATC 3 cut(s) 16, 127, 231
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 51
FaiI YATR 4 cut(s) 8, 46, 137, 313
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 290
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 2 cut(s) 220, 266
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 76, 219
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 113, 249, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 3 cut(s) 16, 127, 231
LpnPI CCDG 6 cut(s) 45, 194, 276, 307, 320, 343
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 18, 129, 233
MboI GATC 3 cut(s) 16, 127, 231
MboII GAAGA 2 cut(s) 137, 298
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 127
MluCI AATT 6 cut(s) 24, 63, 213, 279, 320, 349
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 1 cut(s) 30
MspI CCGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeII GATC 3 cut(s) 16, 127, 231
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 150, 298
RsaNI GTAC 2 cut(s) 149, 297
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 3 cut(s) 16, 127, 231
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 275
SetI ASST 1 cut(s) 94
SfaNI GCATC 1 cut(s) 44
SgeI CNNG 7 cut(s) 72, 155, 193, 275, 306, 319, 342
SinI GGWCC 1 cut(s) 178
Sse9I AATT 6 cut(s) 24, 63, 213, 279, 320, 349
SspMI CTAG 1 cut(s) 143
TasI AATT 6 cut(s) 24, 63, 213, 279, 320, 349
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 268, 287
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 142
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.