Rw1G008610

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
18780239 .. 18781536
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008610.1

Sequence Viewer

Length: 387 bp
ATGCAAAGGAGCATCTGGATTGTTTTTTTGCCGCTGTTCCTGGTTTTGTTCGCTGGTGTTAGTTGGGTGTCCTGTTGTCATTTAGATATTGGGAACAGTGTGCAATCAAGATTTGGAAGTGTTTTGAAATCGGAGATGGCAGCTAAGAATGTGACAAGAGGAATGAGGAGATTGTCAAAACATCGTGTTGCTGAAGATTGTGAAGGTGAAGATAGAGTTGAGCGATCTAATTATGTTAACTCTAAGAGGTGGAGAACAATGTTTGGTCCACACATTGCTGAAGGATCGACTCGATGTCAGAATGCTGATGCATTTGAACATAGTGACAATCAATTTACTGTTGCAGAAGAGTTCTTGCTGCAGGTTGATCTCTCTCTCAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.64

Weight (kDa)

7.73

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 2 cut(s) 213, 300
AgsI TTSAA 2 cut(s) 127, 317
AhdI GACNNNNNGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 140, 358
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 152, 345
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 3 cut(s) 32, 141, 359
BlsI GCNGC 3 cut(s) 33, 142, 360
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 266
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 21, 298
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 152, 345
BsmI GAATGC 1 cut(s) 307
Bsp143I GATC 3 cut(s) 224, 284, 367
BspACI CCGC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 273
BssMI GATC 3 cut(s) 224, 284, 367
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 98, 340
Bst6I CTCTTC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 144, 243
BstKTI GATC 3 cut(s) 227, 287, 370
BstMBI GATC 3 cut(s) 224, 284, 367
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 152, 345
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 266
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
DdeI CTNAG 2 cut(s) 144, 243
DpnI GATC 3 cut(s) 226, 286, 369
DpnII GATC 3 cut(s) 224, 284, 367
DriI GACNNNNNGTC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 213, 300
EcoRII CCWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 313
FaiI YATR 2 cut(s) 234, 321
Fnu4HI GCNGC 3 cut(s) 32, 141, 359
Fsp4HI GCNGC 3 cut(s) 32, 141, 359
GluI GCNGC 3 cut(s) 32, 141, 359
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 289
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 238, 269
Hpy188I TCNGA 2 cut(s) 133, 300
Hpy188III TCNNGA 2 cut(s) 16, 108
Hpy8I GTNNAC 2 cut(s) 238, 269
HpyAV CCTTC 2 cut(s) 197, 275
HpyCH4III ACNGT 2 cut(s) 98, 340
HpyCH4V TGCA 5 cut(s) 4, 103, 311, 344, 361
HpyF3I CTNAG 2 cut(s) 144, 243
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 224, 284, 367
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 26, 39, 53, 85, 347
Lsp1109I GCAGC 2 cut(s) 152, 345
LweI GCATC 2 cut(s) 21, 298
MaeIII GTNAC 2 cut(s) 151, 323
MalI GATC 3 cut(s) 226, 286, 369
MboI GATC 3 cut(s) 224, 284, 367
MboII GAAGA 3 cut(s) 206, 221, 359
MluCI AATT 3 cut(s) 229, 332, 382
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 3 cut(s) 152, 159, 240
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 2 cut(s) 237, 385
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 1 cut(s) 41
NdeII GATC 3 cut(s) 224, 284, 367
NmuCI GTSAC 2 cut(s) 151, 323
NsiI ATGCAT 1 cut(s) 313
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 33, 142, 360
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 237, 385
SatI GCNGC 3 cut(s) 32, 141, 359
Sau3AI GATC 3 cut(s) 224, 284, 367
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 41
SetI ASST 4 cut(s) 145, 208, 251, 366
SfaNI GCATC 2 cut(s) 21, 298
SfcI CTRYAG 1 cut(s) 359
SinI GGWCC 1 cut(s) 266
Sse9I AATT 3 cut(s) 229, 332, 382
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 98, 340
TaqI TCGA 2 cut(s) 287, 292
TasI AATT 3 cut(s) 229, 332, 382
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 237, 385
Tru9I TTAA 2 cut(s) 237, 385
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 151, 323
TseI GCWGC 2 cut(s) 140, 358
Tsp45I GTSAC 2 cut(s) 151, 323
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.