Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

35955837 .. 35975755

Gene Structure 19919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAGGAGAACTACACGTAATCGTGTTTTTTTTGGTGGAGATGAATATGATCGAATTAACTCAAAGAGATGGAAAACGATGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGCATGTCACTGGAATTGAACATTCTGACAAACAATGTAGAGCTGACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGTTATGCCGGTAGAGACTGCTTGCACAAGAACACATCATGCTGAAAATTATGACAATCAAGGGGAAATTCAAGAAATCTGTGATGCTCAGGATTCTAGCATAACCGCAGCTGAATCTGAAAGTATATTTTCCGGTTTGGACGAAGGTCATCAGGTTAGATCAGAAAGGTGGAGAAAAGCTTTTGGACCAGCAGCATCAAAAGAGAGCCAAACTCTGTCCAATTCTGAATCTACAAATGATCATTCGCTATTTCTGCAAACGGATGATACCAGAGCTCTGAGTAGCCAGGGCTTAAATGATTGCTGCAGTGCAATCCAGGCAAAATTGAAGGTTCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.9

Weight (kDa)

5.02

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	2 cut(s)	167, 278
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	224, 374, 631, 638
AjnI	CCWGG	2 cut(s)	588, 618
AluBI	AGCT	4 cut(s)	248, 413, 482, 578
AluI	AGCT	4 cut(s)	248, 413, 482, 578
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	167, 278
ApeKI	GCWGC	4 cut(s)	53, 410, 494, 606
ApoI	RAATTY	1 cut(s)	369
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	4 cut(s)	40, 422, 506, 593
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	590, 620
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	299, 399
BfmI	CTRYAG	1 cut(s)	607
BisI	GCNGC	4 cut(s)	54, 411, 495, 607
BlsI	GCNGC	4 cut(s)	55, 412, 496, 608
Bme1390I	CCNGG	2 cut(s)	590, 620
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	590, 620
BmsI	GCATC	3 cut(s)	200, 376, 506
BoxI	GACNNNNGTC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
Bpu10I	CCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	590, 620
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	404, 572
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	40, 422, 506, 593
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	2 cut(s)	311, 435
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	136, 172, 283, 461, 541
BspACI	CCGC	1 cut(s)	408
BspCNI	CTCAG	2 cut(s)	403, 573
BspMAI	CTGCAG	1 cut(s)	611
BspPI	GGATC	2 cut(s)	167, 278
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	5 cut(s)	136, 172, 283, 461, 541
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	590, 620
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	390, 581
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	5 cut(s)	139, 175, 286, 464, 544
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	136, 172, 283, 461, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 620
BstNI	CCWGG	2 cut(s)	590, 620
BstNSI	RCATGY	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	588, 618
BstSFI	CTRYAG	1 cut(s)	607
BstV1I	GCAGC	4 cut(s)	40, 422, 506, 593
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	3 cut(s)	53, 213, 616
Cac8I	GCNNGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	2 cut(s)	209, 341
CviJI	RGCY	7 cut(s)	248, 413, 482, 510, 578, 588, 594
CviKI_1	RGCY	7 cut(s)	248, 413, 482, 510, 578, 588, 594
DdeI	CTNAG	2 cut(s)	390, 581
DpnI	GATC	5 cut(s)	138, 174, 285, 463, 543
DpnII	GATC	5 cut(s)	136, 172, 283, 461, 541
Ecl136II	GAGCTC	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	588, 618
EcoT38I	GRGCYC	1 cut(s)	580
FaeI	CATG	2 cut(s)	212, 344
FatI	CATG	2 cut(s)	208, 340
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	4 cut(s)	54, 411, 495, 607
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	54, 411, 495, 607
FspBI	CTAG	2 cut(s)	299, 399
GluI	GCNGC	4 cut(s)	54, 411, 495, 607
HapII	CCGG	2 cut(s)	311, 435
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	212, 344
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	3 cut(s)	395, 416, 530
HpaII	CCGG	2 cut(s)	311, 435
Hpy188I	TCNGA	6 cut(s)	10, 232, 421, 466, 529, 582
Hpy188III	TCNNGA	3 cut(s)	299, 374, 392
HpyAV	CCTTC	2 cut(s)	440, 625
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	269, 327, 559, 609, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 620
HpyF3I	CTNAG	2 cut(s)	390, 581
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	212, 344
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	136, 172, 283, 461, 541
Lsp1109I	GCAGC	4 cut(s)	40, 422, 506, 593
LweI	GCATC	3 cut(s)	200, 376, 506
MaeI	CTAG	2 cut(s)	299, 399
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	138, 174, 285, 463, 543
MboI	GATC	5 cut(s)	136, 172, 283, 461, 541
MboII	GAAGA	2 cut(s)	39, 293
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	8 cut(s)	81, 141, 180, 219, 349, 369, 523, 626
MnlI	CCTC	2 cut(s)	15, 186
MseI	TTAA	3 cut(s)	41, 144, 596
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	311, 435
MspR9I	CCNGG	2 cut(s)	590, 620
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	590, 620
MwoI	GCNNNNNNNGC	2 cut(s)	556, 620
NdeII	GATC	5 cut(s)	136, 172, 283, 461, 541
NlaIII	CATG	2 cut(s)	212, 344
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	395, 416, 530
PkrI	GCNGC	4 cut(s)	55, 412, 496, 608
Ppu21I	YACGTR	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	588, 618
PspGI	CCWGG	2 cut(s)	588, 618
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	580
SaqAI	TTAA	3 cut(s)	41, 144, 596
SatI	GCNGC	4 cut(s)	54, 411, 495, 607
Sau3AI	GATC	5 cut(s)	136, 172, 283, 461, 541
Sau96I	GGNCC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	590, 620
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	9 cut(s)	106, 250, 415, 451, 459, 473, 484, 580, 636
SfaNI	GCATC	3 cut(s)	200, 376, 506
SfcI	CTRYAG	1 cut(s)	607
SinI	GGWCC	1 cut(s)	488
Sse9I	AATT	8 cut(s)	81, 141, 180, 219, 349, 369, 523, 626
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	2 cut(s)	299, 399
SstI	GAGCTC	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	588, 618
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	139
TasI	AATT	8 cut(s)	81, 141, 180, 219, 349, 369, 523, 626
TfiI	GAWTC	3 cut(s)	395, 416, 530
Tru1I	TTAA	3 cut(s)	41, 144, 596
Tru9I	TTAA	3 cut(s)	41, 144, 596
TscAI	CASTG	3 cut(s)	53, 220, 616
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	4 cut(s)	53, 410, 494, 606
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	81, 144, 294
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	3 cut(s)	53, 220, 616
VpaK11BI	GGWCC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	2 cut(s)	299, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.