Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

16165042 .. 16181109

Gene Structure 16068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG120100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 760 bp

ATGGGCACAGTTGACATGGGAGGCAGTGAGGCACGCCAATTCGAAGCCTCTTCCATTAAACCACCTGTAGAACAGAGACAACCGGTCGGCGTCGGTGTCTTCGCCTCCGTCTTCGCTTCCGATCCCGACACCCCCTTGGTCCGCCTCGAATGGAGCAAGCAGGACTCCAGGTACATGGCCACCACCATCATGGATAGCGCCAAGGCCGTCGTCCTCGACATCCGCTTCCCTGCTCATCCGGGTCCTGTTGGAGGGCGGTGTGGAACTAGAACAGAGATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCCTCTTATCTCTAAGAGGTTTAGAGCAATGTTGCGTTCGCACATCGTTGAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGATGCAGAGATTGGACGAAAGCGCAAATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTATTCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

6.48

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AciI	CCGC	3 cut(s)	142, 223, 256
AclWI	GGATC	4 cut(s)	116, 344, 352, 610
AcoI	YGGCCR	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	401, 409, 437, 599, 715
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	3 cut(s)	70, 539, 740
AlwI	GGATC	4 cut(s)	116, 344, 352, 610
AoxI	GGCC	2 cut(s)	177, 204
ApeKI	GCWGC	1 cut(s)	329
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	2 cut(s)	200, 483
AspS9I	GGNCC	2 cut(s)	139, 242
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	139, 242
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	4 cut(s)	91, 103, 506, 711
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	194, 271, 656
BceAI	ACGGC	2 cut(s)	191, 307
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	70, 539, 740
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	169, 240
Bme18I	GGWCC	2 cut(s)	139, 242
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	139, 242
BmiI	GGNNCC	2 cut(s)	243, 675
BmrFI	CCNGG	2 cut(s)	169, 240
BmsI	GCATC	2 cut(s)	418, 451
BpiI	GAAGAC	4 cut(s)	91, 103, 506, 711
BpmI	CTGGAG	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	135, 201, 657
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	135, 201, 657
BseGI	GGATG	3 cut(s)	219, 235, 667
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	179, 206
BshNI	GGYRCC	1 cut(s)	673
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	83, 239
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	70, 539, 740
BsnI	GGCC	2 cut(s)	179, 206
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	121, 344, 349, 602, 619
BspACI	CCGC	3 cut(s)	142, 223, 256
BspANI	GGCC	2 cut(s)	179, 206
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	243, 675
BspPI	GGATC	4 cut(s)	116, 344, 352, 610
BspT104I	TTCGAA	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	135, 201, 657
BssMI	GATC	5 cut(s)	121, 344, 349, 602, 619
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	135, 201
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	10, 516
Bst6I	CTCTTC	2 cut(s)	55, 302
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	34, 158
BstDEI	CTNAG	2 cut(s)	363, 417
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	219, 235, 667
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 483
BstKTI	GATC	5 cut(s)	124, 347, 352, 605, 622
BstMAI	GTCTC	3 cut(s)	70, 539, 740
BstMBI	GATC	5 cut(s)	121, 344, 349, 602, 619
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	167, 238
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	4 cut(s)	91, 103, 506, 711
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	2 cut(s)	175, 190
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	179, 206
BtsCI	GGATG	3 cut(s)	219, 235, 667
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	34, 158
CfoI	GCGC	2 cut(s)	200, 483
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	139, 242
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	3 cut(s)	16, 175, 190
CviJI	RGCY	3 cut(s)	47, 179, 206
CviKI_1	RGCY	3 cut(s)	47, 179, 206
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	363, 417
DpnI	GATC	5 cut(s)	123, 346, 351, 604, 621
DpnII	GATC	5 cut(s)	121, 344, 349, 602, 619
DriI	GACNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	55, 302
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	2 cut(s)	55, 302
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	135, 201
Eco47I	GGWCC	2 cut(s)	139, 242
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	135, 201
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	135, 201
FaeI	CATG	3 cut(s)	19, 178, 193
FaiI	YATR	4 cut(s)	17, 176, 191, 441
FatI	CATG	3 cut(s)	15, 174, 189
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	206, 222, 674
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	2 cut(s)	199, 482
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	179, 206
HapII	CCGG	2 cut(s)	83, 239
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	200, 483
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	19, 178, 193
Hin6I	GCGC	2 cut(s)	198, 481
HinP1I	GCGC	2 cut(s)	198, 481
HincII	GTYRAC	2 cut(s)	13, 611
HindII	GTYRAC	2 cut(s)	13, 611
HinfI	GANTC	2 cut(s)	164, 607
HpaII	CCGG	2 cut(s)	83, 239
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	2 cut(s)	13, 611
Hpy188I	TCNGA	5 cut(s)	121, 349, 420, 589, 724
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	13, 611
Hpy99I	CGWCG	2 cut(s)	95, 212
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	2 cut(s)	10, 516
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	3 cut(s)	431, 464, 536
HpyF3I	CTNAG	2 cut(s)	363, 417
HpySE526I	ACGT	1 cut(s)	613
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	19, 178, 193
HspAI	GCGC	2 cut(s)	198, 481
Kzo9I	GATC	5 cut(s)	121, 344, 349, 602, 619
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	78, 96, 146, 154, 181, 243, 252, 258
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	418, 451
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	2 cut(s)	614, 652
MalI	GATC	5 cut(s)	123, 346, 351, 604, 621
MboI	GATC	5 cut(s)	121, 344, 349, 602, 619
MboII	GAAGA	9 cut(s)	42, 91, 103, 293, 319, 511, 573, 711, 712
MfeI	CAATTG	3 cut(s)	537, 549, 750
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	158, 616
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	83, 239
MspR9I	CCNGG	2 cut(s)	169, 240
MunI	CAATTG	3 cut(s)	537, 549, 750
MvaI	CCWGG	1 cut(s)	169
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	121, 344, 349, 602, 619
NlaIII	CATG	3 cut(s)	19, 178, 193
NlaIV	GGNNCC	2 cut(s)	243, 675
NmuCI	GTSAC	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	42
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	158, 615
PpsI	GAGTC	2 cut(s)	158, 615
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	243, 675
PspPI	GGNCC	2 cut(s)	139, 242
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	121, 344, 349, 602, 619
Sau96I	GGNCC	2 cut(s)	139, 242
SchI	GAGTC	2 cut(s)	158, 616
ScrFI	CCNGG	2 cut(s)	169, 240
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	67, 173, 371, 418, 616
SfaNI	GCATC	2 cut(s)	418, 451
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	2 cut(s)	139, 242
SmiMI	CAYNNNNRTG	1 cut(s)	188
SsiI	CCGC	3 cut(s)	142, 223, 256
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	167, 238
StyI	CCWWGG	2 cut(s)	135, 201
TaaI	ACNGT	2 cut(s)	10, 516
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	4 cut(s)	42, 147, 216, 605
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	7 cut(s)	320, 426, 465, 512, 572, 651, 713
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	139, 242
XagI	CCTNNNNNAGG	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.