Rh6DG121800

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000782
Physical Location & Seq
Reverse (-)
17015016 .. 17044525
29510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG121800.1

Sequence Viewer

Length: 1071 bp
ATGCAAGCTCAAGCTGAAACCTATCTAATTAATGGTGATAGTCCTGGTAGTGGTATTAAATCTGTAAAAGATGATGTAGGATGTGGTGATGATGATGGTAATGATCATAAGGGTACTGATATTGATACTGTAAAAGATGGTGTAGAATATGTTGATGATAACAATGATGATTATAGGAGCAGGCAGACATATACATTTGATCAAATTCTATATATTTTTCTCAAGAATATTTTTGTTAGATATGTTGTTAGACCTGTGTCTGCAGTTTTTGGTAATAGGCAACATGTGGATTTGTTCAAATTGTTTTGTGTTGTGAGACATAAAGGTGGGTATGATTCAGTTTCGAAGAAGAGGATCTTAGGAAATGGGGATACTGAAAGTCGTGGAACTTATTTAGAGGTTTGCTGTTGGATGGGACAGAGTATAAGGACAATGGTGATGGACTGGTTCATTTGTAATCTGACCAAAATGGAAAGATTGAATATAGTTTACCATATACCAAAGATGCATCTGGCATTCAGGTATGAAAGTTATAGGAAAGATAAAGACGAAGTCAACACCATCAGAATCACTCATTTGGTGGTGTTGACTGTGTTGCATTCGCTCATCGTTCAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGGTGATTATCAGCATACTGTTGCACCTCTCCGCAAAGATGCAGAGATTGGACGAAAGCGCACATTGAGGAGAAAGAAGACATTGTCAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCGGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTAATCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGGTAGAATTGAATCTCATTGTATGTGCTCTACACCATTGATTTATATTGACAATGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

356

Amino Acids

40.94

Weight (kDa)

5.81

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 922
AciI CCGC 1 cut(s) 703
AclWI GGATC 2 cut(s) 362, 859
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 7 cut(s) 298, 481, 614, 622, 650, 848, 1019
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 8, 14
AluI AGCT 2 cut(s) 8, 14
Alw21I GWGCWC 1 cut(s) 1037
Alw26I GTCTC 3 cut(s) 310, 788, 989
AlwI GGATC 2 cut(s) 362, 859
ApoI RAATTY 1 cut(s) 204
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 1 cut(s) 732
AsuHPI GGTGA 5 cut(s) 47, 98, 448, 686, 803
AsuII TTCGAA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 922
BbsI GAAGAC 2 cut(s) 755, 960
Bbv12I GWGCWC 1 cut(s) 1037
BccI CCATC 6 cut(s) 89, 131, 406, 433, 569, 905
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 2 cut(s) 103, 199
BcoDI GTCTC 3 cut(s) 310, 788, 989
BfmI CTRYAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 924
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 4 cut(s) 495, 517, 631, 700
BoxI GACNNNNGTC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 755, 960
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 906
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 906
BseGI GGATG 3 cut(s) 86, 417, 916
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 754
BshNI GGYRCC 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 1037
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 310, 788, 989
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 2 cut(s) 515, 598
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 1037
Bsp143I GATC 5 cut(s) 103, 199, 354, 851, 868
BspACI CCGC 1 cut(s) 703
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 924
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 362, 859
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 922
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 906
BssMI GATC 5 cut(s) 103, 199, 354, 851, 868
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 130, 592, 691, 765
Bst6I CTCTTC 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 6, 182
BstDEI CTNAG 2 cut(s) 358, 630
BstF5I GGATG 3 cut(s) 86, 417, 916
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 5 cut(s) 106, 202, 357, 854, 871
BstMAI GTCTC 3 cut(s) 310, 788, 989
BstMBI GATC 5 cut(s) 103, 199, 354, 851, 868
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 287
BstPAI GACNNNNGTC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 261
BstV2I GAAGAC 2 cut(s) 755, 960
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuI GTATCC 1 cut(s) 364
BtsCI GGATG 3 cut(s) 86, 417, 916
Cac8I GCNNGC 2 cut(s) 6, 182
CfoI GCGC 1 cut(s) 732
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 284
CviJI RGCY 2 cut(s) 8, 14
CviKI_1 RGCY 2 cut(s) 8, 14
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 358, 630
DpnI GATC 5 cut(s) 105, 201, 356, 853, 870
DpnII GATC 5 cut(s) 103, 199, 354, 851, 868
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 43
EcoT22I ATGCAT 2 cut(s) 510, 646
FaeI CATG 1 cut(s) 287
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 429
FatI CATG 1 cut(s) 283
FbaI TGATCA 2 cut(s) 103, 199
FokI GGATG 3 cut(s) 93, 424, 923
GlaI GCGC 1 cut(s) 731
HhaI GCGC 1 cut(s) 732
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HincII GTYRAC 3 cut(s) 556, 588, 860
HindII GTYRAC 3 cut(s) 556, 588, 860
HinfI GANTC 4 cut(s) 335, 567, 856, 1019
HphI GGTGA 5 cut(s) 47, 98, 448, 686, 803
Hpy166II GTNNAC 4 cut(s) 490, 556, 588, 860
Hpy188I TCNGA 6 cut(s) 462, 566, 633, 760, 838, 973
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 4 cut(s) 490, 556, 588, 860
HpyAV CCTTC 1 cut(s) 842
HpyCH4III ACNGT 4 cut(s) 130, 592, 691, 765
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 8 cut(s) 4, 263, 508, 598, 644, 695, 713, 785
HpyF3I CTNAG 2 cut(s) 358, 630
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 103, 199
Kzo9I GATC 5 cut(s) 103, 199, 354, 851, 868
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 30, 57, 166, 267, 430, 497, 505
LweI GCATC 4 cut(s) 495, 517, 631, 700
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 2 cut(s) 863, 901
MalI GATC 5 cut(s) 105, 201, 356, 853, 870
MboI GATC 5 cut(s) 103, 199, 354, 851, 868
MboII GAAGA 6 cut(s) 358, 361, 760, 822, 960, 961
MfeI CAATTG 3 cut(s) 786, 798, 999
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 1037
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 8 cut(s) 345, 391, 639, 665, 708, 732, 901, 933
Mph1103I ATGCAT 2 cut(s) 510, 646
MseI TTAA 3 cut(s) 30, 57, 959
MslI CAYNNNNRTG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 3 cut(s) 786, 798, 999
Mva1269I GAATGC 2 cut(s) 515, 598
MvaI CCWGG 1 cut(s) 45
NdeII GATC 5 cut(s) 103, 199, 354, 851, 868
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 924
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 2 cut(s) 510, 646
NspI RCATGY 1 cut(s) 287
NspV TTCGAA 1 cut(s) 344
PciI ACATGT 1 cut(s) 283
PctI GAATGC 2 cut(s) 515, 598
PfeI GAWTC 3 cut(s) 335, 567, 1019
PflFI GACNNNGTC 2 cut(s) 551, 754
PleI GAGTC 1 cut(s) 864
PpsI GAGTC 1 cut(s) 864
PscI ACATGT 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 924
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 2 cut(s) 551, 754
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 30, 57, 959
Sau3AI GATC 5 cut(s) 103, 199, 354, 851, 868
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 1037
SfaNI GCATC 4 cut(s) 495, 517, 631, 700
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 9, 221
SmoI CTYRAG 2 cut(s) 9, 221
SsiI CCGC 1 cut(s) 703
SspI AATATT 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 130, 592, 691, 765
TaiI ACGT 1 cut(s) 865
TaqI TCGA 2 cut(s) 344, 854
TfiI GAWTC 3 cut(s) 335, 567, 1019
Tru1I TTAA 3 cut(s) 30, 57, 959
Tru9I TTAA 3 cut(s) 30, 57, 959
TseFI GTSAC 1 cut(s) 863
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 7 cut(s) 439, 540, 639, 678, 821, 900, 962
Tth111I GACNNNGTC 2 cut(s) 551, 754
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 287
Zsp2I ATGCAT 2 cut(s) 510, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.