Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

1230549 .. 1230887

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATCTACGAGAGTTCCGATCCCGACACCCCCTTGGTCCGCCTCGGATGGAGCAAGCAGGACTCCAGGTACATGGCCACCACCATCATGGATAGCGCCAAGGCCGTCGTCCTCGACATCCGCTTTCCTGCTCATCCGGTCGTCGAGTTGCAGAGGACGACTGCACTGCCGGGGACGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGCCTTACCGGGGGCGTGGCCGGTGGCCTGGAAGAGGGTGGTGGGGAGGACGGAGCCGTCGGAGATTTTGGGGAGCTTGGCGGGGTCGTTTGTCCGGTTGGGTGGTGGATCGGTTGTCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

11.51

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
AciI	CCGC	5 cut(s)	40, 121, 185, 215, 295
AclWI	GGATC	2 cut(s)	14, 330
AcoI	YGGCCR	2 cut(s)	75, 232
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	224, 248
AjnI	CCWGG	2 cut(s)	65, 241
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
AlwI	GGATC	2 cut(s)	14, 330
AoxI	GGCC	4 cut(s)	75, 102, 232, 239
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	171, 224
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	77
BccI	CCATC	2 cut(s)	42, 92
BceAI	ACGGC	2 cut(s)	89, 255
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	2 cut(s)	67, 243
BcnI	CCSGG	2 cut(s)	171, 224
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	4 cut(s)	67, 171, 224, 243
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	4 cut(s)	67, 171, 224, 243
BpmI	CTGGAG	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	171, 224
BsaJI	CCNNGG	6 cut(s)	33, 43, 99, 170, 206, 223
BsaWI	WCCGGW	3 cut(s)	136, 308, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 248
Bse118I	RCCGGY	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	67, 243
BseDI	CCNNGG	6 cut(s)	33, 43, 99, 170, 206, 223
BseGI	GGATG	3 cut(s)	53, 117, 133
BseLI	CCNNNNNNNGG	2 cut(s)	224, 248
BsgI	GTGCAG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	4 cut(s)	77, 104, 234, 241
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	7 cut(s)	137, 170, 188, 223, 235, 309, 333
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	224, 248
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	77, 104, 234, 241
Bsp143I	GATC	4 cut(s)	3, 19, 194, 322
BspACI	CCGC	5 cut(s)	40, 121, 185, 215, 295
BspANI	GGCC	4 cut(s)	77, 104, 234, 241
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	14, 330
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	6 cut(s)	33, 43, 99, 170, 206, 223
BssMI	GATC	4 cut(s)	3, 19, 194, 322
BssT1I	CCWWGG	2 cut(s)	33, 99
Bst2UI	CCWGG	2 cut(s)	67, 243
Bst6I	CTCTTC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	53, 117, 133
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	6, 22, 197, 325
BstMBI	GATC	4 cut(s)	3, 19, 194, 322
BstMCI	CGRYCG	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	67, 243
BstPI	GGTNACC	1 cut(s)	210
BstSCI	CCNGG	4 cut(s)	65, 169, 222, 241
BstXI	CCANNNNNNTGG	2 cut(s)	73, 88
BsuRI	GGCC	4 cut(s)	77, 104, 234, 241
BtsCI	GGATG	3 cut(s)	53, 117, 133
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	73, 88
CviJI	RGCY	7 cut(s)	77, 104, 205, 234, 241, 270, 290
CviKI_1	RGCY	7 cut(s)	77, 104, 205, 234, 241, 270, 290
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	4 cut(s)	5, 21, 196, 324
DpnII	GATC	4 cut(s)	3, 19, 194, 322
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
EaeI	YGGCCR	2 cut(s)	75, 232
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	33, 99
Eco47I	GGWCC	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	65, 241
EcoT14I	CCWWGG	2 cut(s)	33, 99
ErhI	CCWWGG	2 cut(s)	33, 99
FaeI	CATG	2 cut(s)	76, 91
FaiI	YATR	2 cut(s)	74, 89
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	72, 87
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	60, 104, 120
Fsp4HI	GCNGC	1 cut(s)	185
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	77, 104, 234, 241
HapII	CCGG	7 cut(s)	137, 170, 188, 223, 235, 309, 333
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	76, 91
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	7 cut(s)	137, 170, 188, 223, 235, 309, 333
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	19, 47, 276
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	3 cut(s)	110, 146, 276
HpyCH4V	TGCA	2 cut(s)	151, 164
Hsp92II	CATG	2 cut(s)	76, 91
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	3, 19, 194, 322
LmnI	GCTCC	3 cut(s)	51, 267, 287
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	4 cut(s)	5, 21, 196, 324
MboI	GATC	4 cut(s)	3, 19, 194, 322
MboII	GAAGA	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	53, 122, 147, 201, 242, 254
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	7 cut(s)	137, 170, 188, 223, 235, 309, 333
MspR9I	CCNGG	4 cut(s)	67, 171, 224, 243
MvaI	CCWGG	2 cut(s)	67, 243
NciI	CCSGG	2 cut(s)	171, 224
NdeII	GATC	4 cut(s)	3, 19, 194, 322
NlaIII	CATG	2 cut(s)	76, 91
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 203
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	65, 241
PspEI	GGTNACC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	65, 241
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	3, 19, 194, 322
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	4 cut(s)	67, 171, 224, 243
SetI	ASST	3 cut(s)	71, 212, 292
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	86
SsiI	CCGC	5 cut(s)	40, 121, 185, 215, 295
StyD4I	CCNGG	4 cut(s)	65, 169, 222, 241
StyI	CCWWGG	2 cut(s)	33, 99
TaqI	TCGA	2 cut(s)	114, 144
TauI	GCSGC	1 cut(s)	187
TscAI	CASTG	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.