Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

16772145 .. 16775303

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGAACCAAAATTGTATACTCCATCAATATATTAGGAGGAGCCTCACAAGGTAGCAACAGCTTAGCTGTTCATAGAGTGGATGACTGGGACTATTTTCAGAAAAGTGGGCTGAAGGAAAAGTATCAAAAGACTAGATTCGAGGACAATCTTCGCAACTCAATGGACAGAATGCTTGATAAGCATAACATGGATACCATCAGAAAGACAATGCAGATGCATGAAGACACCTTTAGGCACCAGATATGTGAGCTCCACCGGCTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAACCAAGAGATAAAACAAAACAAAATTTGGGGTCCCATGACTAGTAGTGCAGATCACATTCACATTCACCAGTCTCAGTTGTTTAACCAGCAGCATTTGACAGCTCAAACTGCATCTTCCGGATATAATTTCCATGTTCATAGGTTGAGAGATGATCCAAACTCTAGAGAGCGCAGTGGAAGTTGCTCAGGAGAGTATACCATGAGAATTTCAAGAGGTTTTGATCTCGAAAGGCCAGCTGCCGAGGAAGACATCTCGACAGGAGTTAGTACTATTGATCAAGACCAGACAGGGCCAAGTTCTAGCATGGCATTGATCAAAAGTAACAATATGAGGAGCATGGATGTCTATGACGAAGATAGTGAGGAAGTGGAGCTTACATTAAGCATTGGAAGCAGCAAGAGCAAGAAAAGATCCAAACCTCACCTGCGGCCTCATTTAGGGTGTTCGGAGCTGGTGATCAATAAAGAAAAGGTACTCGACTCACCTGCCTCGTTCAAATCAGATAGAGGAGATTGCAGTGATCCCACAACTCCCATGAGCAGCTCCAGTGCAACAGTTGACCAGGAAAGAAAGCAGCCACATTGGCTTTTCCATGGTTTAAAGCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

303

Amino Acids

34.61

Weight (kDa)

6.73

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	732, 793
Acc36I	ACCTGC	2 cut(s)	732, 793
AccB1I	GGYRCC	1 cut(s)	237
AccI	GTMKAC	2 cut(s)	18, 494
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	446, 705, 815
AcsI	RAATTY	2 cut(s)	321, 504
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	266, 273, 568, 774
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	2 cut(s)	510, 796
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	9 cut(s)	63, 68, 253, 401, 536, 673, 751, 843, 904
AluI	AGCT	9 cut(s)	63, 68, 253, 401, 536, 673, 751, 843, 904
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	3 cut(s)	446, 705, 815
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	3 cut(s)	530, 590, 728
ApeKI	GCWGC	5 cut(s)	388, 536, 693, 840, 874
ApoI	RAATTY	2 cut(s)	321, 504
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	329, 590
AsuHPI	GGTGA	4 cut(s)	356, 713, 766, 774
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	231, 552
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	5 cut(s)	400, 523, 705, 852, 886
BccI	CCATC	2 cut(s)	32, 206
BcgI	CGANNNNNNTGC	2 cut(s)	767, 801
BciT130I	CCWGG	1 cut(s)	863
BciVI	GTATCC	1 cut(s)	187
BclI	TGATCA	3 cut(s)	574, 612, 756
BcoDI	GTCTC	1 cut(s)	375
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	4 cut(s)	135, 339, 462, 600
BfuAI	ACCTGC	2 cut(s)	732, 793
BfuI	GTATCC	1 cut(s)	187
BglI	GCCNNNNNGGC	1 cut(s)	883
BisI	GCNGC	6 cut(s)	389, 537, 694, 728, 841, 875
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	6 cut(s)	390, 538, 695, 729, 842, 876
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	329, 590
BmiI	GGNNCC	5 cut(s)	7, 43, 239, 330, 331
BmrFI	CCNGG	1 cut(s)	863
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	207, 270, 419
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	2 cut(s)	231, 552
BpmI	CTGGAG	1 cut(s)	829
Bpu10I	CCTNAGC	1 cut(s)	484
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	540, 892
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	3 cut(s)	92, 367, 846
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	2 cut(s)	540, 892
BseGI	GGATG	3 cut(s)	88, 295, 646
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMII	CTCAG	2 cut(s)	386, 498
BseNI	ACTGG	3 cut(s)	92, 367, 846
BseRI	GAGGAG	3 cut(s)	54, 646, 822
BseXI	GCAGC	5 cut(s)	400, 523, 705, 852, 886
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	532, 592, 730
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	259, 417
BslFI	GGGAC	2 cut(s)	104, 315
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	104, 315
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	532, 592, 730
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	416
Bsp1407I	TGTACA	2 cut(s)	264, 271
Bsp143I	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
Bsp1720I	GCTNAGC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	3 cut(s)	532, 592, 730
BspCNI	CTCAG	2 cut(s)	385, 497
BspEI	TCCGGA	1 cut(s)	416
BspLI	GGNNCC	5 cut(s)	7, 43, 239, 330, 331
BspMI	ACCTGC	2 cut(s)	732, 793
BspPI	GGATC	3 cut(s)	446, 705, 815
BspT107I	GGYRCC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	258
BsrGI	TGTACA	2 cut(s)	264, 271
BsrI	ACTGG	3 cut(s)	92, 367, 846
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	540, 892
BssMI	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
BssNAI	GTATAC	2 cut(s)	19, 495
BssT1I	CCWWGG	1 cut(s)	892
Bst1107I	GTATAC	2 cut(s)	19, 495
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	269, 856
BstAUI	TGTACA	2 cut(s)	264, 271
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	64, 372, 484
BstDSI	CCRYGG	1 cut(s)	892
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	3 cut(s)	88, 295, 646
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	8 cut(s)	352, 454, 523, 577, 615, 713, 759, 823
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	181, 259, 407, 690, 699, 883
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstV1I	GCAGC	5 cut(s)	400, 523, 705, 852, 886
BstV2I	GAAGAC	2 cut(s)	231, 552
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BstZ17I	GTATAC	2 cut(s)	19, 495
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	532, 592, 730
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	3 cut(s)	88, 295, 646
BtsI	GCAGTG	2 cut(s)	478, 823
BtsIMutI	CAGTG	4 cut(s)	274, 478, 823, 853
BveI	ACCTGC	2 cut(s)	732, 793
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	329, 590
Csp6I	GTAC	4 cut(s)	265, 272, 567, 773
CviAII	CATG	9 cut(s)	190, 221, 334, 431, 499, 604, 637, 835, 893
CviQI	GTAC	4 cut(s)	265, 272, 567, 773
DdeI	CTNAG	3 cut(s)	64, 372, 484
DpnI	GATC	8 cut(s)	351, 453, 522, 576, 614, 712, 758, 822
DpnII	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
DraI	TTTAAA	1 cut(s)	900
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	892
FaeI	CATG	9 cut(s)	193, 224, 337, 434, 502, 607, 640, 838, 896
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	2 cut(s)	104, 315
FatI	CATG	9 cut(s)	189, 220, 333, 430, 498, 603, 636, 834, 892
FbaI	TGATCA	3 cut(s)	574, 612, 756
FblI	GTMKAC	2 cut(s)	18, 494
Fnu4HI	GCNGC	6 cut(s)	389, 537, 694, 728, 841, 875
FokI	GGATG	3 cut(s)	95, 302, 653
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	389, 537, 694, 728, 841, 875
FspBI	CTAG	4 cut(s)	135, 339, 462, 600
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	6 cut(s)	389, 537, 694, 728, 841, 875
GsuI	CTGGAG	1 cut(s)	829
HaeIII	GGCC	3 cut(s)	532, 592, 730
HapII	CCGG	2 cut(s)	259, 417
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	9 cut(s)	193, 224, 337, 434, 502, 607, 640, 838, 896
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	2 cut(s)	138, 779
HpaII	CCGG	2 cut(s)	259, 417
HphI	GGTGA	4 cut(s)	356, 713, 766, 774
Hpy166II	GTNNAC	4 cut(s)	19, 272, 495, 859
Hpy188I	TCNGA	4 cut(s)	102, 203, 748, 802
Hpy188III	TCNNGA	7 cut(s)	417, 462, 486, 510, 524, 553, 578
Hpy8I	GTNNAC	4 cut(s)	19, 272, 495, 859
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	269, 856
HpyCH4V	TGCA	6 cut(s)	214, 220, 347, 410, 816, 851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	181, 259, 407, 690, 699, 883
HpyF3I	CTNAG	3 cut(s)	64, 372, 484
Hsp92II	CATG	9 cut(s)	193, 224, 337, 434, 502, 607, 640, 838, 896
HspAI	GCGC	1 cut(s)	469
KflI	GGGWCCC	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	416
Ksp22I	TGATCA	3 cut(s)	574, 612, 756
Kzo9I	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
LmnI	GCTCC	6 cut(s)	41, 258, 633, 670, 748, 848
Lsp1109I	GCAGC	5 cut(s)	400, 523, 705, 852, 886
LweI	GCATC	3 cut(s)	207, 270, 419
MaeI	CTAG	4 cut(s)	135, 339, 462, 600
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	8 cut(s)	351, 453, 522, 576, 614, 712, 758, 822
MboI	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
MboII	GAAGA	5 cut(s)	143, 236, 405, 557, 665
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	4 cut(s)	12, 321, 424, 504
MlyI	GAGTC	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	416
MseI	TTAA	3 cut(s)	381, 680, 899
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	259, 417
MspR9I	CCNGG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	6 cut(s)	181, 259, 407, 690, 699, 883
NcoI	CCATGG	1 cut(s)	892
NdeII	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
NlaIII	CATG	9 cut(s)	193, 224, 337, 434, 502, 607, 640, 838, 896
NlaIV	GGNNCC	5 cut(s)	7, 43, 239, 330, 331
NmeAIII	GCCGAG	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	222
PaqCI	CACCTGC	2 cut(s)	732, 793
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	6 cut(s)	390, 538, 695, 729, 842, 876
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	5 cut(s)	7, 43, 239, 330, 331
PspPI	GGNCC	2 cut(s)	329, 590
PspPPI	RGGWCCY	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	4 cut(s)	266, 273, 568, 774
RsaNI	GTAC	4 cut(s)	265, 272, 567, 773
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	381, 680, 899
SatI	GCNGC	6 cut(s)	389, 537, 694, 728, 841, 875
Sau3AI	GATC	8 cut(s)	349, 451, 520, 574, 612, 710, 756, 820
Sau96I	GGNCC	2 cut(s)	329, 590
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	3 cut(s)	207, 270, 419
SinI	GGWCC	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	4 cut(s)	12, 321, 424, 504
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	4 cut(s)	135, 339, 462, 600
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	269, 856
TaqI	TCGA	4 cut(s)	141, 525, 554, 777
TasI	AATT	4 cut(s)	12, 321, 424, 504
TatI	WGTACW	3 cut(s)	264, 271, 566
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	3 cut(s)	381, 680, 899
Tru9I	TTAA	3 cut(s)	381, 680, 899
TscAI	CASTG	4 cut(s)	274, 478, 823, 853
TseI	GCWGC	5 cut(s)	388, 536, 693, 840, 874
TspDTI	ATGAA	4 cut(s)	62, 237, 306, 425
TspRI	CASTG	4 cut(s)	274, 478, 823, 853
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	2 cut(s)	321, 504
XbaI	TCTAGA	1 cut(s)	461
XmiI	GTMKAC	2 cut(s)	18, 494
XspI	CTAG	4 cut(s)	135, 339, 462, 600
ZrmI	AGTACT	1 cut(s)	568
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.