Rh6AG146100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000782
Physical Location & Seq
Reverse (-)
22850187 .. 22865500
15314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG146100.1

Sequence Viewer

Length: 228 bp
ATGTCCAAGCTTCATACCAAAATTCTTGACGTTATGCCGGTAGAGACTGCTTGCACAAGAACACATCATGCTGAAAATTATGACAATCAAGGGGAAATTCAAGAAATCTGTGATGCTCAGGATTCTAGCATAACCGCAGCTGAATCTGAAAGAATATTTTCCGGTTTGGACGAAGGTCATCAGTTTTGTTTATATCGTTCTTCGTCAATGATTGATTTATATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.5

Weight (kDa)

4.57

Isoelectric Point (pI)

71.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 21, 96
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 10, 140
AluI AGCT 2 cut(s) 10, 140
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 21, 96
Asp700I GAANNNNTTC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 37
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 38, 162
BsmAI GTCTC 1 cut(s) 38
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 38
BstPAI GACNNNNGTC 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 37
CviAII CATG 1 cut(s) 68
CviJI RGCY 2 cut(s) 10, 140
CviKI_1 RGCY 2 cut(s) 10, 140
DdeI CTNAG 1 cut(s) 117
FaeI CATG 1 cut(s) 71
FaiI YATR 8 cut(s) 15, 35, 69, 81, 131, 193, 220, 222
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 138
HapII CCGG 2 cut(s) 38, 162
Hin1II CATG 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 122, 143
HpaII CCGG 2 cut(s) 38, 162
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 26, 101, 119
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 71
LpnPI CCDG 3 cut(s) 51, 104, 175
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 30
MboII GAAGA 1 cut(s) 192
MluCI AATT 3 cut(s) 21, 76, 96
MroXI GAANNNNTTC 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 38, 162
NlaIII CATG 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 122, 143
PkrI GCNGC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 140
SatI GCNGC 1 cut(s) 138
SetI ASST 4 cut(s) 12, 33, 142, 178
SfaNI GCATC 1 cut(s) 103
Sse9I AATT 3 cut(s) 21, 76, 96
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 21, 76, 96
TfiI GAWTC 2 cut(s) 122, 143
TseI GCWGC 1 cut(s) 137
XapI RAATTY 2 cut(s) 21, 96
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.