Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

18430078 .. 18430338

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTACAGTTGACATGGGAGGCAGTGAGGCACGCCGATTCGAAGCCTCTTCCATTAAACCACCTGCAGAACAGAGAAAACCGGTCGGCGTCGGTGTCTTCGCCTCCGATCCCTTGGTCCGCCTCGGATGGAGCAAGCAGGACTCCAGGAACATGGCCACCACCATCATGGATAGCGCCAAGGCCGTCGTCCTCGACATCCGCTTCCCTGCCCGATTGCGGAGGAGCCGAAGCCGACTTTGCCGCCGGAAAGATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

11.47

Isoelectric Point (pI)

73.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	4 cut(s)	121, 202, 220, 244
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	146
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	156, 183
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	91
BccI	CCATC	2 cut(s)	123, 173
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	114, 124, 180
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	114, 124, 180
BseGI	GGATG	2 cut(s)	134, 198
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	158, 185
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	83, 247
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	2 cut(s)	158, 185
Bsp119I	TTCGAA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	109, 253
BspACI	CCGC	4 cut(s)	121, 202, 220, 244
BspANI	GGCC	2 cut(s)	158, 185
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	114, 124, 180
BssMI	GATC	2 cut(s)	109, 253
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	114, 180
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	34, 137
BstF5I	GGATG	2 cut(s)	134, 198
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	112, 256
BstMBI	GATC	2 cut(s)	109, 253
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	91
BstXI	CCANNNNNNTGG	2 cut(s)	154, 169
BsuRI	GGCC	2 cut(s)	158, 185
BtsCI	GGATG	2 cut(s)	134, 198
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	34, 137
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	6
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	3 cut(s)	16, 154, 169
CviJI	RGCY	5 cut(s)	47, 158, 185, 228, 234
CviKI_1	RGCY	5 cut(s)	47, 158, 185, 228, 234
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	111, 255
DpnII	GATC	2 cut(s)	109, 253
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	114, 180
Eco47I	GGWCC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	114, 180
ErhI	CCWWGG	2 cut(s)	114, 180
FaeI	CATG	3 cut(s)	19, 157, 172
FaiI	YATR	3 cut(s)	17, 155, 170
FatI	CATG	3 cut(s)	15, 153, 168
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	141, 185
Fsp4HI	GCNGC	1 cut(s)	244
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	158, 185
HapII	CCGG	2 cut(s)	83, 247
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	19, 157, 172
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	39, 143
HpaII	CCGG	2 cut(s)	83, 247
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	109, 128
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	2 cut(s)	95, 191
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	19, 157, 172
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	109, 253
LmnI	GCTCC	2 cut(s)	132, 225
LpnPI	CCDG	6 cut(s)	78, 96, 125, 133, 160, 222
MalI	GATC	2 cut(s)	111, 255
MboI	GATC	2 cut(s)	109, 253
MboII	GAAGA	2 cut(s)	42, 91
MlsI	TGGCCA	1 cut(s)	158
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	14, 22, 58, 115, 134, 203, 216
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	2 cut(s)	83, 247
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	2 cut(s)	109, 253
NlaIII	CATG	3 cut(s)	19, 157, 172
NlaIV	GGNNCC	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	109, 253
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	4 cut(s)	121, 202, 220, 244
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	114, 180
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	42, 195
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	31
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.