Rh4DG240100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000782
Physical Location & Seq
Reverse (-)
44856841 .. 44860642
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG240100.1

Sequence Viewer

Length: 366 bp
ATGTCGACAGTTAACGTAGAGCAGATTTTTCTCAGGAAAGTGGTTTTGCTTTTGGAGTCTCTGTTGGAGCGGATTGTTGGAACATCAAGTCAACATGAAAATGTAGATGCATCTGAACATAGTGAGAATGAAGTTAGGGGTGGTGATGAAAATACCACTGCAGGTGTAAATGCATTTGACGCTGCAGAGATTACACGAAGTAGCACGATGAGAAGAATGAAAAGATTGTTACAACAATGTGCTACTGAAAATTATGAAATTGGAGGGACAGTTGACCAAGGAAGAGCTGAATCCAATTGTATGTATTCTACAGCATTTACTTACATGAATAGTGTCGGCAAAGATAACAAGCCACCAACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

5.0

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 70
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 155
BbvI GCAGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 3 cut(s) 159, 183, 309
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 97, 119
BmuI ACTGGG 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 255, 285
Bse1I ACTGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 280
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 45
BspMAI CTGCAG 2 cut(s) 163, 187
BspMI ACCTGC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 10, 271
Bst6I CTCTTC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 3 cut(s) 159, 183, 309
BstV1I GCAGC 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 152
CseI GACGC 1 cut(s) 188
CviAII CATG 2 cut(s) 95, 325
CviJI RGCY 2 cut(s) 287, 352
CviKI_1 RGCY 2 cut(s) 287, 352
DdeI CTNAG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 2 cut(s) 112, 175
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 98, 328
FaiI YATR 5 cut(s) 96, 120, 255, 302, 326
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 94, 324
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HgaI GACGC 1 cut(s) 188
Hin1II CATG 2 cut(s) 98, 328
HincII GTYRAC 4 cut(s) 6, 13, 92, 274
HindII GTYRAC 4 cut(s) 6, 13, 92, 274
HinfI GANTC 2 cut(s) 56, 290
HpaI GTTAAC 1 cut(s) 13
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 4 cut(s) 6, 13, 92, 274
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 4 cut(s) 6, 13, 92, 274
HpyCH4III ACNGT 2 cut(s) 10, 271
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 110, 161, 173, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 98, 328
KspAI GTTAAC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 19, 147
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 97, 119
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 70
MboII GAAGA 2 cut(s) 225, 294
MfeI CAATTG 1 cut(s) 295
MluCI AATT 3 cut(s) 250, 258, 295
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 45, 58
MnlI CCTC 1 cut(s) 257
Mph1103I ATGCAT 2 cut(s) 112, 175
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 99
MunI CAATTG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIII CATG 2 cut(s) 98, 328
NsiI ATGCAT 2 cut(s) 112, 175
PaqCI CACCTGC 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PstI CTGCAG 2 cut(s) 163, 187
RseI CAYNNNNRTG 1 cut(s) 99
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 183
SchI GAGTC 1 cut(s) 65
SetI ASST 3 cut(s) 18, 166, 289
SfaNI GCATC 2 cut(s) 97, 119
SfcI CTRYAG 3 cut(s) 159, 183, 309
SgeI CNNG 9 cut(s) 46, 99, 107, 174, 207, 217, 290, 337, 361
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 3 cut(s) 250, 258, 295
SsiI CCGC 1 cut(s) 70
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 10, 271
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 250, 258, 295
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 111, 144, 162, 233, 270, 341
TspRI CASTG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 2 cut(s) 112, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.