Rroxscaffold_4G00316540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
41490253 .. 41493048
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316540.1

Sequence Viewer

Length: 582 bp
ATGCAAAAGAATTTTGGCACCATCTTTCTGCAGCTGTTCCTTTGCCTATTGCTCAGTGTCGTCTTGCTTGCTTATTCTTATTCAGTTATAAACGATTTTAGGAGCAGTTTGCAGCCAGATTATTCAACTGTCTTGAATTCAGAGATGGAAGATAAGAGTGTGAGGAGAGGAATTAAGAGATTATTAGAGCAGTGTGCTGCTGAAAGAAGTGGATCTGATCGTGTTAACTCTAAGAGGTTTAGAACACTGTTGCATCCACACATTGCTGATCCATCAAATCAACCTCAGAATCTAGATGCATTTGAACATAGTGAGGATCAAGGAAGAAGTGAATCTAATCCTGTTAAATCTAAGAGGTGGAGAACAATGTTTCATTCAGATATTTCTGAAGCATCAAGTGAATGTGAGAATGTTGTTATTGAGGATGCAGAGGTGGCACCAAAGAGTATGATGAGGAGAATGAACAAATTATTACGCCAGTGTCGTGCTGAAAATCACAAAATTGGAGAGGCAATTGAGCAAGGAAGAATTGAATCTAATCGTATGTGCTCTCCATCATTGATTTATATTCATGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.16

Weight (kDa)

7.69

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 17, 436
AclWI GGATC 3 cut(s) 220, 263, 324
AcsI RAATTY 2 cut(s) 10, 136
AcuI CTGAAG 1 cut(s) 408
AgsI TTSAA 4 cut(s) 126, 136, 305, 533
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 551
AlwI GGATC 3 cut(s) 220, 263, 324
ApeKI GCWGC 3 cut(s) 31, 112, 197
ApoI RAATTY 2 cut(s) 10, 136
BanI GGYRCC 2 cut(s) 17, 436
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 3 cut(s) 43, 124, 184
BccI CCATC 4 cut(s) 29, 139, 280, 562
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 32, 113, 198
BlsI GCNGC 3 cut(s) 33, 114, 199
BmiI GGNNCC 2 cut(s) 19, 438
BmsI GCATC 4 cut(s) 262, 286, 401, 415
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 2 cut(s) 253, 430
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 67, 299
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 178, 469
BseXI GCAGC 3 cut(s) 43, 124, 184
BshNI GGYRCC 2 cut(s) 17, 436
BsiHKAI GWGCWC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 4 cut(s) 212, 217, 268, 316
BspCNI CTCAG 2 cut(s) 66, 298
BspLI GGNNCC 2 cut(s) 19, 438
BspMAI CTGCAG 1 cut(s) 33
BspPI GGATC 3 cut(s) 220, 263, 324
BspT107I GGYRCC 2 cut(s) 17, 436
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 478
BssMI GATC 4 cut(s) 212, 217, 268, 316
Bst4CI ACNGT 2 cut(s) 130, 249
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 53, 231, 285, 351
BstF5I GGATG 2 cut(s) 253, 430
BstKTI GATC 4 cut(s) 215, 220, 271, 319
BstMBI GATC 4 cut(s) 212, 217, 268, 316
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 43, 124, 184
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtsCI GGATG 2 cut(s) 253, 430
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 4 cut(s) 61, 197, 245, 485
Cac8I GCNNGC 1 cut(s) 69
CviAII CATG 1 cut(s) 572
CviJI RGCY 2 cut(s) 34, 115
CviKI_1 RGCY 2 cut(s) 34, 115
DdeI CTNAG 4 cut(s) 53, 231, 285, 351
DpnI GATC 4 cut(s) 214, 219, 270, 318
DpnII GATC 4 cut(s) 212, 217, 268, 316
Eco57I CTGAAG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 1 cut(s) 575
FaiI YATR 6 cut(s) 89, 309, 449, 545, 567, 573
FatI CATG 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 32, 113, 198
FokI GGATG 2 cut(s) 240, 437
Fsp4HI GCNGC 3 cut(s) 32, 113, 198
FspBI CTAG 1 cut(s) 293
GluI GCNGC 3 cut(s) 32, 113, 198
Hin1II CATG 1 cut(s) 575
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 289, 332, 533
HpaI GTTAAC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 142, 217, 288, 379, 388
Hpy188III TCNNGA 2 cut(s) 133, 293
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 130, 249
HpyCH4V TGCA 6 cut(s) 4, 31, 112, 253, 299, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 4 cut(s) 53, 231, 285, 351
Hsp92II CATG 1 cut(s) 575
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 212, 217, 268, 316
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 129, 354, 491
Lsp1109I GCAGC 3 cut(s) 43, 124, 184
LweI GCATC 4 cut(s) 262, 286, 401, 415
MaeI CTAG 1 cut(s) 293
MalI GATC 4 cut(s) 214, 219, 270, 318
MboI GATC 4 cut(s) 212, 217, 268, 316
MboII GAAGA 3 cut(s) 161, 336, 537
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 7 cut(s) 10, 136, 171, 467, 501, 513, 528
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 3 cut(s) 174, 225, 345
MspA1I CMGCKG 1 cut(s) 34
MunI CAATTG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 4 cut(s) 212, 217, 268, 316
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 2 cut(s) 19, 438
NsiI ATGCAT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PfeI GAWTC 3 cut(s) 289, 332, 533
PkrI GCNGC 3 cut(s) 33, 114, 199
PsiI TTATAA 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 19, 438
PstI CTGCAG 1 cut(s) 33
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 174, 225, 345
SatI GCNGC 3 cut(s) 32, 113, 198
Sau3AI GATC 4 cut(s) 212, 217, 268, 316
SduI GDGCHC 1 cut(s) 551
SetI ASST 5 cut(s) 36, 239, 286, 359, 435
SfaNI GCATC 4 cut(s) 262, 286, 401, 415
SfcI CTRYAG 1 cut(s) 29
Sse9I AATT 7 cut(s) 10, 136, 171, 467, 501, 513, 528
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 130, 249
TasI AATT 7 cut(s) 10, 136, 171, 467, 501, 513, 528
TfiI GAWTC 3 cut(s) 289, 332, 533
Tru1I TTAA 3 cut(s) 174, 225, 345
Tru9I TTAA 3 cut(s) 174, 225, 345
TscAI CASTG 4 cut(s) 61, 197, 252, 485
TseI GCWGC 3 cut(s) 31, 112, 197
TspDTI ATGAA 3 cut(s) 362, 476, 560
TspRI CASTG 4 cut(s) 61, 197, 252, 485
XapI RAATTY 2 cut(s) 10, 136
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.