RchiOBHm_Chr1g0334941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000782
Physical Location & Seq
Forward (+)
27143827 .. 27156763
12937 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56362

Sequence Viewer

Length: 771 bp
ATGCAAAGGAGTATCTGGGTTGTTTTTTTGGCACTGCTCCTGATTCTGTTATTTGGTGTTGGTTCAGCATTCTGTTTTTATCCAGATATTGGGAGTAGTGAGGTATCTGAATTTGAAAGTGTTTTGAATTCAGTGATGGCGCCGAAAAGTGTGCTAAGAGGAACAAAAAGGTTGTTAAAACAGTGTGCTACTGAAAGTCATGAAACTAGAGAGGCAATTGAGCAGAGAAGGCCTAAATCTAATCGTGTCTCTCTTGACGGAGATCAGTGTGATCAAGTTAAATCAGATAGATGGAAAACAATGTGTCACGCTGCACAAATTCCTGAAGCATCAAATGAATGTGAGAATGTCAATGGATTTGAACACTCTGAGGAACTATTTCGAGGTGACGATCAAAATATTACAGAAGTTATCCCTCAAGAAGCTGCTTGGACAGCAATGGATTACGCTGAAGGTCATGATAGTGAAAGCGAAATGCAACAAATGGATAATTGTGACAATGTTACTGCAGTTAGTCAATATGGACATCATCAAGTTAGATCAGAGAGATGGAGAGAATTGTGTAGGTTAAGAATAACAAATAAGAACCAGATTTCATCGACTTCTGAATGTGGGAATGCCAATGCAACTGTGAACCAAAATTTTCTTCTTCGTCAAAACTTGCATGCTAATAATGGAGGTACAACTGGTGAATGCTCACATTCATTTGGTCAAGCATCATATCAAAGAAGCAAGCAAGGATTAATCGTGAAATACGAAGATTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.86

Weight (kDa)

5.23

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 89
AcsI RAATTY 4 cut(s) 110, 127, 318, 640
AcuI CTGAAG 2 cut(s) 345, 471
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 116, 127, 362
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 311, 425
ApoI RAATTY 4 cut(s) 110, 127, 318, 640
AseI ATTAAT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 398, 701
BanI GGYRCC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 298, 412
BccI CCATC 3 cut(s) 130, 285, 543
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 2 cut(s) 312, 426
BlsI GCNGC 2 cut(s) 313, 427
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 2 cut(s) 338, 725
BpuEI CTTGAG 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 691
BseXI GCAGC 2 cut(s) 298, 412
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 253
BsmI GAATGC 3 cut(s) 68, 622, 698
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 4 cut(s) 262, 271, 391, 539
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 2 cut(s) 199, 457
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 691
BssMI GATC 4 cut(s) 262, 271, 391, 539
BssNI GRCGYC 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 183, 631
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 666, 734
BstDEI CTNAG 2 cut(s) 155, 369
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 4 cut(s) 265, 274, 394, 542
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 4 cut(s) 262, 271, 391, 539
BstMWI GCNNNNNNNGC 2 cut(s) 229, 434
BstNSI RCATGY 1 cut(s) 668
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 298, 412
BsuRI GGCC 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 32, 138, 188, 272
Cac8I GCNNGC 2 cut(s) 666, 734
CciI TCATGA 2 cut(s) 199, 457
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 681
CviAII CATG 3 cut(s) 200, 458, 665
CviJI RGCY 2 cut(s) 232, 425
CviKI_1 RGCY 2 cut(s) 232, 425
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 2 cut(s) 155, 369
DinI GGCGCC 1 cut(s) 141
DpnI GATC 4 cut(s) 264, 273, 393, 541
DpnII GATC 4 cut(s) 262, 271, 391, 539
Eco147I AGGCCT 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 345, 471
EcoRI GAATTC 1 cut(s) 127
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
FaeI CATG 3 cut(s) 203, 461, 668
FaiI YATR 5 cut(s) 201, 459, 522, 666, 721
FatI CATG 3 cut(s) 199, 457, 664
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 312, 426
Fsp4HI GCNGC 2 cut(s) 312, 426
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 312, 426
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 1 cut(s) 232
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 3 cut(s) 203, 461, 668
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 43, 761
HphI GGTGA 2 cut(s) 398, 701
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 6 cut(s) 109, 286, 370, 544, 607, 766
Hpy188III TCNNGA 8 cut(s) 40, 83, 200, 254, 323, 419, 458, 748
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 2 cut(s) 222, 446
HpyCH4III ACNGT 2 cut(s) 183, 631
HpyCH4V TGCA 6 cut(s) 4, 314, 478, 509, 626, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 434
HpyF3I CTNAG 2 cut(s) 155, 369
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 3 cut(s) 203, 461, 668
HspAI GCGC 1 cut(s) 140
KasI GGCGCC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 4 cut(s) 262, 271, 391, 539
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 53, 96, 336, 602, 672
Lsp1109I GCAGC 2 cut(s) 298, 412
LweI GCATC 2 cut(s) 338, 725
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 4 cut(s) 305, 386, 494, 502
MalI GATC 4 cut(s) 264, 273, 393, 541
MboI GATC 4 cut(s) 262, 271, 391, 539
MboII GAAGA 3 cut(s) 638, 641, 770
MfeI CAATTG 1 cut(s) 216
MluCI AATT 7 cut(s) 110, 127, 216, 318, 490, 557, 640
Mly113I GGCGCC 1 cut(s) 140
MnlI CCTC 7 cut(s) 94, 152, 205, 364, 377, 426, 671
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 5 cut(s) 176, 279, 569, 743, 769
MslI CAYNNNNRTG 1 cut(s) 462
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 3 cut(s) 68, 622, 698
MwoI GCNNNNNNNGC 2 cut(s) 229, 434
NarI GGCGCC 1 cut(s) 140
NdeII GATC 4 cut(s) 262, 271, 391, 539
NlaIII CATG 3 cut(s) 203, 461, 668
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 305, 386, 494
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PagI TCATGA 2 cut(s) 199, 457
PceI AGGCCT 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PctI GAATGC 3 cut(s) 68, 622, 698
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 43, 761
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 2 cut(s) 313, 427
PluTI GGCGCC 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 743
PspN4I GGNNCC 1 cut(s) 141
PstI CTGCAG 1 cut(s) 511
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 5 cut(s) 176, 279, 569, 743, 769
SatI GCNGC 2 cut(s) 312, 426
Sau3AI GATC 4 cut(s) 262, 271, 391, 539
SetI ASST 7 cut(s) 105, 173, 388, 427, 457, 569, 682
SfaNI GCATC 2 cut(s) 338, 725
SfcI CTRYAG 1 cut(s) 507
SfoI GGCGCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
SphI GCATGC 1 cut(s) 668
Sse9I AATT 7 cut(s) 110, 127, 216, 318, 490, 557, 640
SseBI AGGCCT 1 cut(s) 232
SspDI GGCGCC 1 cut(s) 139
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 207
StuI AGGCCT 1 cut(s) 232
TaaI ACNGT 2 cut(s) 183, 631
TaqI TCGA 2 cut(s) 382, 599
TasI AATT 7 cut(s) 110, 127, 216, 318, 490, 557, 640
TfiI GAWTC 2 cut(s) 43, 761
Tru1I TTAA 5 cut(s) 176, 279, 569, 743, 769
Tru9I TTAA 5 cut(s) 176, 279, 569, 743, 769
TscAI CASTG 4 cut(s) 39, 138, 188, 272
TseFI GTSAC 3 cut(s) 305, 386, 494
TseI GCWGC 2 cut(s) 311, 425
Tsp45I GTSAC 3 cut(s) 305, 386, 494
TspDTI ATGAA 4 cut(s) 216, 351, 585, 693
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 4 cut(s) 39, 138, 188, 272
Van91I CCANNNNNTGG 1 cut(s) 89
VspI ATTAAT 1 cut(s) 743
XapI RAATTY 4 cut(s) 110, 127, 318, 640
XceI RCATGY 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.