RchiOBHm_Chr7g0229561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000782
Physical Location & Seq
Reverse (-)
53110038 .. 53119177
9140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20564

Sequence Viewer

Length: 342 bp
ATGATTCTTATTCGAATTATAAGAAGACGCAGCAGGATTAGAGGTTTTATGCAAAAGAGCATTTGTATTGTTCTTTTGCCACTGTTCCTGATTCTGATATTGGGTGTTTGTTCGTTGTCCTATTGTAATTCAGATATTAGGGATAGTGTGCTATTCAAATTTGGAAGTACTGTGGATTCAGTGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGGAGAGCTAACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGTTATGCCGGTAGAGACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.69

Weight (kDa)

5.28

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
AclWI GGATC 2 cut(s) 182, 293
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 157, 239
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 2 cut(s) 182, 293
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 314
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 169
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 187, 298
BspPI GGATC 2 cut(s) 182, 293
BspT104I TTCGAA 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 325
BssMI GATC 2 cut(s) 187, 298
Bst4CI ACNGT 2 cut(s) 84, 172
BstBI TTCGAA 1 cut(s) 13
BstKTI GATC 2 cut(s) 190, 301
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 187, 298
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 80, 186, 228
Cfr10I RCCGGY 1 cut(s) 325
CseI GACGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 168
CviJI RGCY 1 cut(s) 263
CviKI_1 RGCY 1 cut(s) 263
CviQI GTAC 1 cut(s) 168
DpnI GATC 2 cut(s) 189, 300
DpnII GATC 2 cut(s) 187, 298
Eco57I CTGAAG 1 cut(s) 222
FaiI YATR 5 cut(s) 20, 50, 217, 308, 323
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 36
HinfI GANTC 3 cut(s) 4, 91, 176
HpaII CCGG 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 96, 133, 247
Hpy188III TCNNGA 2 cut(s) 88, 314
HpyCH4III ACNGT 2 cut(s) 84, 172
HpyCH4V TGCA 2 cut(s) 52, 284
Kzo9I GATC 2 cut(s) 187, 298
LpnPI CCDG 3 cut(s) 19, 101, 216
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 189, 300
MboI GATC 2 cut(s) 187, 298
MboII GAAGA 2 cut(s) 36, 308
MflI RGATCY 1 cut(s) 298
MluCI AATT 5 cut(s) 15, 127, 158, 195, 234
MnlI CCTC 2 cut(s) 35, 201
MseI TTAA 1 cut(s) 340
MspI CCGG 1 cut(s) 326
NdeII GATC 2 cut(s) 187, 298
NmuCI GTSAC 1 cut(s) 226
NspV TTCGAA 1 cut(s) 13
PfeI GAWTC 3 cut(s) 4, 91, 176
PkrI GCNGC 1 cut(s) 32
PsiI TTATAA 1 cut(s) 20
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 187, 298
ScaI AGTACT 1 cut(s) 169
SetI ASST 2 cut(s) 46, 265
SfaNI GCATC 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 13
SgeI CNNG 5 cut(s) 46, 100, 243, 326, 338
Sse9I AATT 5 cut(s) 15, 127, 158, 195, 234
SspMI CTAG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 84, 172
TaqI TCGA 1 cut(s) 13
TasI AATT 5 cut(s) 15, 127, 158, 195, 234
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 3 cut(s) 4, 91, 176
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 3 cut(s) 87, 186, 235
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 3 cut(s) 87, 186, 235
XapI RAATTY 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 313
XspI CTAG 1 cut(s) 314
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.