Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

19979235 .. 19985388

Gene Structure 6154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACAGCCGATGGTGCAGAGCTCAATGGAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGTAAGATTCTAAGCTTGGATAATCTGGCGCCGGTTTGCTTCCAAAATCTGGTTGCTAAACTAAAGCAGCCGAGAGGGATGTCAATGATTTCTTCTCCTTCTTTGGTTGCCCTCCCTTTTCCCCTTAATTTGGATTCTGGACGGTTGATTGAAAAAATTACAAGGTGTGTGACTTCTGATATTAGGGATAGTGTGCTATTCAAATTTGGAAGTACTGTGGATTCAGTGATGGCGTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAGGAGAACTAGGAGAACTGCACGTAATCGTGTTTTTTTTGGTGGAGATGAATATGATCAAATTAACTCAGAGAGATGGAAAACGATGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGGAGAGCTAACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGATCGCTACATTGTCACTGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

226

Amino Acids

25.19

Weight (kDa)

5.51

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	11 - 43	4e-09	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	163
AclWI	GGATC	2 cut(s)	518, 629
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	143, 347
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	163, 244, 644
AgsI	TTSAA	4 cut(s)	58, 266, 316, 575
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	3 cut(s)	22, 129, 599
AluI	AGCT	3 cut(s)	22, 129, 599
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	518, 629
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	181, 395
ApoI	RAATTY	1 cut(s)	317
AseI	ATTAAT	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	193, 382
BccI	CCATC	5 cut(s)	5, 58, 62, 337, 501
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	441, 650
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	182, 396
BlsI	GCNGC	2 cut(s)	183, 397
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	143, 347
BsaI	GGTCTC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 244, 644
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	73, 198
BseLI	CCNNNNNNNGG	3 cut(s)	163, 244, 644
BseMII	CTCAG	2 cut(s)	513, 663
BseNI	ACTGG	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	193, 382
BsgI	GTGCAG	2 cut(s)	36, 435
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	163, 244, 644
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	487, 523, 634, 655
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	512, 664
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	518, 629
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	4 cut(s)	487, 523, 634, 655
BssNI	GRCGYC	2 cut(s)	143, 347
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	258, 331, 390
BstACI	GRCGYC	2 cut(s)	143, 347
BstBAI	YACGTR	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	125, 499, 672
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	73, 198
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	4 cut(s)	490, 526, 637, 658
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	4 cut(s)	487, 523, 634, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	193, 382
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	73, 198
BtsIMutI	CAGTG	4 cut(s)	345, 395, 564, 669
BveI	ACCTGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	145
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	8, 22, 53, 78, 129, 184, 599
CviKI_1	RGCY	7 cut(s)	8, 22, 53, 78, 129, 184, 599
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	125, 499, 672
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	4 cut(s)	489, 525, 636, 657
DpnII	GATC	4 cut(s)	487, 523, 634, 655
EaeI	YGGCCR	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	1 cut(s)	77
FaiI	YATR	8 cut(s)	48, 75, 94, 98, 359, 486, 553, 644
FatI	CATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	182, 396
FokI	GGATG	2 cut(s)	80, 205
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	182, 396
FspBI	CTAG	2 cut(s)	441, 650
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	182, 396
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	143, 347
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	3 cut(s)	121, 248, 335
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	292, 352, 502, 583
Hpy188III	TCNNGA	2 cut(s)	252, 650
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	258, 331, 390
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	17, 452, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	125, 499, 672
HpySE526I	ACGT	1 cut(s)	454
Hsp92I	GRCGYC	2 cut(s)	143, 347
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	487, 523, 634, 655
LpnPI	CCDG	9 cut(s)	23, 50, 96, 125, 149, 159, 237, 384, 552
Lsp1109I	GCAGC	2 cut(s)	193, 382
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	441, 650
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	4 cut(s)	40, 283, 562, 667
MalI	GATC	4 cut(s)	489, 525, 636, 657
MboI	GATC	4 cut(s)	487, 523, 634, 655
MboII	GAAGA	4 cut(s)	198, 381, 644, 665
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	7 cut(s)	241, 270, 317, 423, 492, 531, 570
MluNI	TGGCCA	1 cut(s)	78
Mly113I	GGCGCC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	23, 182, 236, 357, 537
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	240, 383, 495
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	14
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	4 cut(s)	487, 523, 634, 655
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	4 cut(s)	40, 283, 562, 667
OliI	CACNNNNGTG	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	121, 248, 335
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	183, 397
PluTI	GGCGCC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	240, 383, 495
SatI	GCNGC	2 cut(s)	182, 396
Sau3AI	GATC	4 cut(s)	487, 523, 634, 655
ScaI	AGTACT	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	8 cut(s)	24, 34, 47, 85, 131, 281, 457, 601
SfaNI	GCATC	1 cut(s)	551
SfoI	GGCGCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	7 cut(s)	241, 270, 317, 423, 492, 531, 570
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	441, 650
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	258, 331, 390
TaiI	ACGT	1 cut(s)	457
TasI	AATT	7 cut(s)	241, 270, 317, 423, 492, 531, 570
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	121, 248, 335
Tru1I	TTAA	3 cut(s)	240, 383, 495
Tru9I	TTAA	3 cut(s)	240, 383, 495
TscAI	CASTG	4 cut(s)	345, 395, 571, 676
TseFI	GTSAC	4 cut(s)	40, 283, 562, 667
TseI	GCWGC	2 cut(s)	181, 395
Tsp45I	GTSAC	4 cut(s)	40, 283, 562, 667
TspDTI	ATGAA	3 cut(s)	423, 495, 645
TspRI	CASTG	4 cut(s)	345, 395, 571, 676
Van91I	CCANNNNNTGG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	383
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	649
XspI	CTAG	2 cut(s)	441, 650
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.