Rh1BG112800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000782
Physical Location & Seq
Reverse (-)
19261130 .. 19276768
15639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG112800.1

Sequence Viewer

Length: 591 bp
ATGGAGGCCATCATCGACGCCTACGAGCCAAACTCCGGCGACCAAGAAGGCCAGACCCGCCGCTCACTCGTCGCCGAACTCGCTCTTCGACGACCCTGGCTTTTTTCATCGATCTTCGCGGTGATTTCCCGCCGCGTTGATTCGCTGGTCTCCGCTCCGACCGCCGCGGATGGTGAAGATGCTGTTTGCAAGGAAAGAAATGAGAACACTAACGGTGGGTGCTTGATGCTACTGGTAAAACCACCATCCTCTACAAGCTCAAACTTGCACAATTGGTACTATCCACTACTCCACTTGGTGATGGCGCCGAAAAGTGTGCTAAGAGGAACAAAAAGGTTGTTAAAACAGTGTGCTACTGAAAGTCATGAAACTAGAGAGGCAATTGAGCAGAGAAGGCCTAAATCTAATCGTGTTTCTCTTGGCGGAGATCAGTGTGATCAAGTTAAATCAGATAGATGGAAAACAATCTGTCACGCCGCACAAATTCCTGAAGCATCAAATGAATGTGAGAATGTCAATGGATTTGAACACTCTGAGGAACTATTTCGAGGTGACGATCAAAATATTACAGAAGGTAAATTTTTTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.02

Weight (kDa)

5.99

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 2 cut(s) 63, 155
AccII CGCG 3 cut(s) 119, 135, 167
AcsI RAATTY 2 cut(s) 483, 578
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 2 cut(s) 18, 305
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 527
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 3 cut(s) 6, 49, 395
ApoI RAATTY 2 cut(s) 483, 578
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 4 cut(s) 133, 185, 310, 563
BanI GGYRCC 1 cut(s) 304
BccI CCATC 5 cut(s) 17, 164, 253, 295, 450
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 4 cut(s) 61, 133, 165, 477
BlsI GCNGC 4 cut(s) 62, 134, 166, 478
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 3 cut(s) 169, 216, 503
BplI GAGNNNNNCTC 2 cut(s) 17, 49
Bsa29I ATCGAT 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 18, 305
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 95, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 95, 165
BseGI GGATG 2 cut(s) 175, 245
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 119, 135, 167
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 8, 51, 397
BshNI GGYRCC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 3 cut(s) 8, 51, 397
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 111, 427, 436, 556
BspANI GGCC 3 cut(s) 8, 51, 397
BspCNI CTCAG 1 cut(s) 526
BspDI ATCGAT 1 cut(s) 110
BspFNI CGCG 3 cut(s) 119, 135, 167
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 306
BspQI GCTCTTC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 2 cut(s) 63, 155
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 95, 165
BssMI GATC 4 cut(s) 111, 427, 436, 556
BssNI GRCGYC 2 cut(s) 18, 305
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 215, 348
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 2 cut(s) 18, 305
BstDEI CTNAG 2 cut(s) 320, 534
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 175, 245
BstFNI CGCG 3 cut(s) 119, 135, 167
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 114, 430, 439, 559
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 4 cut(s) 111, 427, 436, 556
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 57, 80, 161, 394
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstUI CGCG 3 cut(s) 119, 135, 167
Bsu15I ATCGAT 1 cut(s) 110
BsuRI GGCC 3 cut(s) 8, 51, 397
BsuTUI ATCGAT 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 175, 245
BtsIMutI CAGTG 2 cut(s) 353, 437
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 307
Cfr42I CCGCGG 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 110
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 365
CviJI RGCY 6 cut(s) 8, 28, 51, 100, 258, 397
CviKI_1 RGCY 6 cut(s) 8, 28, 51, 100, 258, 397
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 320, 534
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 113, 429, 438, 558
DpnII GATC 4 cut(s) 111, 427, 436, 556
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 510
EcoRII CCWGG 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 1 cut(s) 368
FaiI YATR 1 cut(s) 366
FatI CATG 1 cut(s) 364
FauI CCCGC 2 cut(s) 65, 137
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 61, 133, 165, 477
FokI GGATG 2 cut(s) 182, 232
Fsp4HI GCNGC 4 cut(s) 61, 133, 165, 477
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 61, 133, 165, 477
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 3 cut(s) 8, 51, 397
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 18, 305
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 36
HphI GGTGA 4 cut(s) 133, 185, 310, 563
Hpy188I TCNGA 3 cut(s) 159, 451, 535
Hpy188III TCNNGA 2 cut(s) 365, 488
Hpy99I CGWCG 3 cut(s) 20, 74, 93
HpyAV CCTTC 3 cut(s) 41, 387, 566
HpyCH4III ACNGT 2 cut(s) 215, 348
HpyCH4V TGCA 2 cut(s) 189, 268
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 80, 161, 394
HpyF3I CTNAG 2 cut(s) 320, 534
Hsp92I GRCGYC 2 cut(s) 18, 305
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 436
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 4 cut(s) 111, 427, 436, 556
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 49, 65, 82, 109, 131, 218, 501
LweI GCATC 3 cut(s) 169, 216, 503
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 470, 551
MalI GATC 4 cut(s) 113, 429, 438, 558
MbiI CCGCTC 2 cut(s) 63, 155
MboI GATC 4 cut(s) 111, 427, 436, 556
MboII GAAGA 3 cut(s) 77, 106, 188
MfeI CAATTG 2 cut(s) 271, 381
MluCI AATT 4 cut(s) 271, 381, 483, 578
Mly113I GGCGCC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 5 cut(s) 259, 317, 370, 529, 542
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 2 cut(s) 341, 444
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 2 cut(s) 271, 381
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 3 cut(s) 119, 135, 167
MwoI GCNNNNNNNGC 4 cut(s) 57, 80, 161, 394
NarI GGCGCC 1 cut(s) 305
NdeII GATC 4 cut(s) 111, 427, 436, 556
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 2 cut(s) 470, 551
PagI TCATGA 1 cut(s) 364
PceI AGGCCT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 62, 134, 166, 478
PluTI GGCGCC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 306
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacII CCGCGG 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 341, 444
SatI GCNGC 4 cut(s) 61, 133, 165, 477
Sau3AI GATC 4 cut(s) 111, 427, 436, 556
ScrFI CCNGG 1 cut(s) 97
SetI ASST 4 cut(s) 260, 338, 553, 577
SfaNI GCATC 3 cut(s) 169, 216, 503
SfoI GGCGCC 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
Sse9I AATT 4 cut(s) 271, 381, 483, 578
SseBI AGGCCT 1 cut(s) 397
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 372
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 215, 348
TaqI TCGA 4 cut(s) 15, 88, 110, 547
TasI AATT 4 cut(s) 271, 381, 483, 578
TauI GCSGC 4 cut(s) 63, 135, 167, 479
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 341, 444
Tru9I TTAA 2 cut(s) 341, 444
TscAI CASTG 2 cut(s) 353, 437
TseFI GTSAC 2 cut(s) 470, 551
Tsp45I GTSAC 2 cut(s) 470, 551
TspDTI ATGAA 3 cut(s) 96, 381, 516
TspRI CASTG 2 cut(s) 353, 437
XapI RAATTY 2 cut(s) 483, 578
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.