RLG00000017433

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000782
Physical Location & Seq
Reverse (-)
16702087 .. 16702969
883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017433

Sequence Viewer

Length: 402 bp
ATGAAGACATTGTCAGCCCAGTGTGCTGTTGAAAATTCTGGAAGTGGAAACAAAGTTCATCAAGGAAGAAGTGAATTTAATCCTGTCAGATCTAAGAGGTGGAGAAGAATGTTTGATTCACACATTGGTGAAGGATCAAGTCAACGTCAAAATCTGGATGCAGCTGAATATAGTTATGATCAATTTACAAGCGATCATTTACAAAATATTGTTATTGAGGAGGCAGAGGTGGCATCAAACAGGATGACAAGGAGAATGAGCAGATTGTTACGGCATGGTTCTGCTGAAAATTACAGAATTGGAGAAACAATTGAGCAAGGAAGAATTGAATCTAATCTAAATCAGTTCTTTGGAATGTTGGAGTATGATCCAGACCTTGGAATGTATGGTCCAACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.24

Weight (kDa)

6.08

Isoelectric Point (pI)

71.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 377
AclWI GGATC 2 cut(s) 142, 362
AcsI RAATTY 2 cut(s) 34, 74
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 2 cut(s) 32, 329
AleI CACNNNNGTG 1 cut(s) 126
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AlwI GGATC 2 cut(s) 142, 362
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 34, 74
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 287
BclI TGATCA 1 cut(s) 178
BglII AGATCT 1 cut(s) 89
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 148, 242
BmuI ACTGGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 163, 249
BseLI CCNNNNNNNGG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 377
Bsp143I GATC 5 cut(s) 89, 134, 178, 193, 367
BspPI GGATC 2 cut(s) 142, 362
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 5 cut(s) 89, 134, 178, 193, 367
BssT1I CCWWGG 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 163, 249
BstKTI GATC 5 cut(s) 92, 137, 181, 196, 370
BstMBI GATC 5 cut(s) 89, 134, 178, 193, 367
BstMWI GCNNNNNNNGC 2 cut(s) 23, 230
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BtsCI GGATG 2 cut(s) 163, 249
BtsIMutI CAGTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 389
CviAII CATG 1 cut(s) 275
CviJI RGCY 2 cut(s) 17, 164
CviKI_1 RGCY 2 cut(s) 17, 164
DdeI CTNAG 1 cut(s) 93
DpnI GATC 5 cut(s) 91, 136, 180, 195, 369
DpnII GATC 5 cut(s) 89, 134, 178, 193, 367
Eco130I CCWWGG 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 278
FaiI YATR 5 cut(s) 171, 177, 276, 366, 387
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 170, 256
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 278
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 2 cut(s) 116, 329
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 3 cut(s) 39, 155, 371
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 230
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 89, 134, 178, 193, 367
LpnPI CCDG 6 cut(s) 24, 32, 96, 140, 226, 384
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 148, 242
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 267
MalI GATC 5 cut(s) 91, 136, 180, 195, 369
MboI GATC 5 cut(s) 89, 134, 178, 193, 367
MboII GAAGA 4 cut(s) 16, 78, 117, 333
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 89
MluCI AATT 7 cut(s) 34, 74, 182, 289, 297, 309, 324
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 4 cut(s) 90, 211, 214, 220
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 164
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 23, 230
NdeII GATC 5 cut(s) 89, 134, 178, 193, 367
NlaIII CATG 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 126
PfeI GAWTC 2 cut(s) 116, 329
PflFI GACNNNGTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 389
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 5 cut(s) 89, 134, 178, 193, 367
Sau96I GGNCC 1 cut(s) 389
SetI ASST 5 cut(s) 101, 148, 166, 231, 378
SfaNI GCATC 2 cut(s) 148, 242
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 7 cut(s) 34, 74, 182, 289, 297, 309, 324
SspI AATATT 1 cut(s) 208
StyI CCWWGG 1 cut(s) 376
TaiI ACGT 1 cut(s) 148
TasI AATT 7 cut(s) 34, 74, 182, 289, 297, 309, 324
TfiI GAWTC 2 cut(s) 116, 329
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 26
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 17, 47
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 10
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 2 cut(s) 34, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.