RchiOBHm_Chr4g0395441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000782
Physical Location & Seq
Forward (+)
11140946 .. 11144242
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36788

Sequence Viewer

Length: 240 bp
ATGCAAAGGAGTATCTACATTATTCTTTTGCCTCTATTCCTGGTTTTGTTGCTTGGTGTTAGTTTGGTGTCCTATTGTTATTCAAATATTGGGAACAGTGAGCGATCAAAATCTACAAATTTTCTGGACTCAGTGATGGCATCTACAAGCACAACGAAACGGGTTAAAAGATTGTTGGAAGGAGGATGTAAATCTAATCAATTTGATCAAGTTAATTCAAAGAGATGGAAAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.99

Weight (kDa)

10.11

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 118
AgsI TTSAA 2 cut(s) 84, 219
AjnI CCWGG 1 cut(s) 39
ApoI RAATTY 1 cut(s) 118
BccI CCATC 2 cut(s) 130, 219
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 149
BsaBI GATNNNNATC 2 cut(s) 109, 190
Bse8I GATNNNNATC 2 cut(s) 109, 190
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 2 cut(s) 109, 190
BseMII CTCAG 1 cut(s) 144
Bsp143I GATC 2 cut(s) 104, 205
BspCNI CTCAG 1 cut(s) 143
BssMI GATC 2 cut(s) 104, 205
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 107, 208
BstMBI GATC 2 cut(s) 104, 205
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 103, 138
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 106, 207
DpnII GATC 2 cut(s) 104, 205
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 1 cut(s) 238
FbaI TGATCA 1 cut(s) 205
FokI GGATG 1 cut(s) 198
HinfI GANTC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 104, 205
LpnPI CCDG 3 cut(s) 26, 53, 110
LweI GCATC 1 cut(s) 149
MalI GATC 2 cut(s) 106, 207
MboI GATC 2 cut(s) 104, 205
MluCI AATT 3 cut(s) 118, 200, 214
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 2 cut(s) 42, 176
MseI TTAA 2 cut(s) 165, 213
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
NdeII GATC 2 cut(s) 104, 205
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 165, 213
Sau3AI GATC 2 cut(s) 104, 205
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 41
SfaNI GCATC 1 cut(s) 149
SgeI CNNG 7 cut(s) 52, 53, 65, 137, 159, 173, 221
Sse9I AATT 3 cut(s) 118, 200, 214
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 98
TasI AATT 3 cut(s) 118, 200, 214
Tru1I TTAA 2 cut(s) 165, 213
Tru9I TTAA 2 cut(s) 165, 213
TscAI CASTG 2 cut(s) 103, 138
TspRI CASTG 2 cut(s) 103, 138
XapI RAATTY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.