Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

3129844 .. 3132001

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCCGCTGATGGATGATAGAGGCATTTTGGGTCAAACCGTCAAACCCTCTGGTGGAAGTGTGCTCGAACCCTCTGGCGGTTTGGTGAGACAGAGAGCAAGCTCGATTGGCAGAGCGGTAGCTTTGTTTGGCTCAGAGGATGCCAAGAAGCGTGGCCAGCGGTGCGGTGCCGCTGAAGGATGGTTAACGGTGCCGCTGATGGATGGCCCACAGTTTTGCTTTCTCTTTCATTCAGCAACCTGTTGTGCCGAGATGGAGAAATGGACGCTTGATGACTGTTGGGTTATTGACTGTTCCCCGACTTCGTCCTCGACGGGGTTCCTTCCGTCCTCCATACGATTCGAAGCCTCTTCCATTAAACCACCTGCAGAACAGAAACAACCGGTCGGCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCCCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGAGCAACTGCAGTGGTGTTCTTCTCAGCCAAATTGCGGCGACGCCGAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGGGGGCGTGGCCAGTGGCCTGGAAGAGGGTGGTGGGGAGGACGGAGCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

257

Amino Acids

26.73

Weight (kDa)

4.96

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
AasI	GACNNNNNNGTC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	3 cut(s)	167, 190, 438
AccBSI	CCGCTC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	3 cut(s)	154, 549, 726
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	2 cut(s)	390, 639
AgeI	ACCGGT	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	441, 735
AluBI	AGCT	2 cut(s)	102, 122
AluI	AGCT	2 cut(s)	102, 122
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	550
AsiGI	ACCGGT	1 cut(s)	382
AspS9I	GGNCC	5 cut(s)	206, 468, 504, 516, 531
AsuC2I	CCSGG	3 cut(s)	489, 586, 718
AsuHPI	GGTGA	3 cut(s)	97, 683, 713
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	516
BalI	TGGCCA	3 cut(s)	156, 551, 728
BanI	GGYRCC	3 cut(s)	167, 190, 438
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	5 cut(s)	4, 174, 193, 197, 247
BceAI	ACGGC	2 cut(s)	443, 749
BciT130I	CCWGG	2 cut(s)	443, 737
BcnI	CCSGG	3 cut(s)	489, 586, 718
BcoDI	GTCTC	1 cut(s)	82
BfmI	CTRYAG	2 cut(s)	366, 605
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	6 cut(s)	5, 171, 194, 634, 657, 687
BlsI	GCNGC	6 cut(s)	6, 172, 195, 635, 658, 688
Bme1390I	CCNGG	5 cut(s)	443, 489, 586, 718, 737
Bme18I	GGWCC	1 cut(s)	516
BmgT120I	GGNCC	5 cut(s)	206, 468, 504, 516, 531
BmiI	GGNNCC	6 cut(s)	169, 192, 320, 440, 517, 763
BmrFI	CCNGG	5 cut(s)	443, 489, 586, 718, 737
BmsI	GCATC	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	3 cut(s)	489, 586, 718
BsaHI	GRCGYC	2 cut(s)	390, 639
BsaJI	CCNNGG	5 cut(s)	488, 527, 585, 708, 717
BsaWI	WCCGGW	2 cut(s)	382, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	443, 737
BseDI	CCNNGG	5 cut(s)	488, 527, 585, 708, 717
BseGI	GGATG	6 cut(s)	19, 145, 185, 208, 399, 415
BseMII	CTCAG	2 cut(s)	147, 635
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	513
BsgI	GTGCAG	1 cut(s)	465
Bsh1285I	CGRYCG	2 cut(s)	387, 423
BshNI	GGYRCC	3 cut(s)	167, 190, 438
BshTI	ACCGGT	1 cut(s)	382
BsiEI	CGRYCG	2 cut(s)	387, 423
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	7 cut(s)	383, 419, 488, 585, 660, 690, 717
BslFI	GGGAC	2 cut(s)	505, 529
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	505, 529
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	555, 666, 696
Bsp19I	CCATGG	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	146, 634
BspLI	GGNNCC	6 cut(s)	169, 192, 320, 440, 517, 763
BspMAI	CTGCAG	2 cut(s)	370, 609
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	342
BspT107I	GGYRCC	3 cut(s)	167, 190, 438
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	5 cut(s)	488, 527, 585, 708, 717
BssMI	GATC	3 cut(s)	555, 666, 696
BssNI	GRCGYC	2 cut(s)	390, 639
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	2 cut(s)	443, 737
Bst4CI	ACNGT	5 cut(s)	40, 190, 213, 278, 293
Bst6I	CTCTTC	2 cut(s)	355, 735
BstACI	GRCGYC	2 cut(s)	390, 639
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	100, 158, 448
BstDEI	CTNAG	2 cut(s)	133, 621
BstDSI	CCRYGG	1 cut(s)	527
BstEII	GGTNACC	1 cut(s)	712
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	6 cut(s)	19, 145, 185, 208, 399, 415
BstKTI	GATC	3 cut(s)	558, 669, 699
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	555, 666, 696
BstMCI	CGRYCG	2 cut(s)	387, 423
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 157, 162, 653, 683
BstNI	CCWGG	2 cut(s)	443, 737
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	5 cut(s)	441, 487, 584, 716, 735
BstSFI	CTRYAG	2 cut(s)	366, 605
BstXI	CCANNNNNNTGG	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	6 cut(s)	19, 145, 185, 208, 399, 415
BtsI	GCAGTG	2 cut(s)	482, 614
BtsIMutI	CAGTG	3 cut(s)	482, 614, 736
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	100, 158, 448
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	5 cut(s)	206, 468, 504, 516, 531
CseI	GACGC	4 cut(s)	274, 379, 439, 647
CspAI	ACCGGT	1 cut(s)	382
CspCI	CAANNNNNGTGG	4 cut(s)	133, 168, 590, 625
CviAII	CATG	1 cut(s)	528
DdeI	CTNAG	2 cut(s)	133, 621
DpnI	GATC	3 cut(s)	557, 668, 698
DpnII	GATC	3 cut(s)	555, 666, 696
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	3 cut(s)	154, 549, 726
Eam1104I	CTCTTC	2 cut(s)	355, 735
EarI	CTCTTC	2 cut(s)	355, 735
Eco130I	CCWWGG	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoO109I	RGGNCCY	2 cut(s)	504, 516
EcoO65I	GGTNACC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	441, 735
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	1 cut(s)	531
FaiI	YATR	2 cut(s)	335, 529
FaqI	GGGAC	2 cut(s)	505, 529
FatI	CATG	1 cut(s)	527
Fnu4HI	GCNGC	6 cut(s)	5, 171, 194, 634, 657, 687
FokI	GGATG	6 cut(s)	26, 152, 192, 215, 386, 402
Fsp4HI	GCNGC	6 cut(s)	5, 171, 194, 634, 657, 687
GluI	GCNGC	6 cut(s)	5, 171, 194, 634, 657, 687
HapII	CCGG	7 cut(s)	383, 419, 488, 585, 660, 690, 717
HgaI	GACGC	4 cut(s)	274, 379, 439, 647
Hin1I	GRCGYC	2 cut(s)	390, 639
Hin1II	CATG	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	339, 496
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	7 cut(s)	383, 419, 488, 585, 660, 690, 717
HphI	GGTGA	3 cut(s)	97, 683, 713
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	136, 770
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	4 cut(s)	316, 428, 544, 641
HpyAV	CCTTC	2 cut(s)	170, 332
HpyCH4III	ACNGT	5 cut(s)	40, 190, 213, 278, 293
HpyCH4V	TGCA	4 cut(s)	368, 433, 482, 607
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 157, 162, 653, 683
HpyF3I	CTNAG	2 cut(s)	133, 621
Hsp92I	GRCGYC	2 cut(s)	390, 639
Hsp92II	CATG	1 cut(s)	531
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	555, 666, 696
LmnI	GCTCC	1 cut(s)	761
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	3 cut(s)	557, 668, 698
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	3 cut(s)	555, 666, 696
MboII	GAAGA	3 cut(s)	342, 609, 752
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	3 cut(s)	156, 551, 728
MluCI	AATT	1 cut(s)	628
MluNI	TGGCCA	3 cut(s)	156, 551, 728
MlyI	GAGTC	1 cut(s)	490
Mox20I	TGGCCA	3 cut(s)	156, 551, 728
MscI	TGGCCA	3 cut(s)	156, 551, 728
MseI	TTAA	2 cut(s)	185, 357
Msp20I	TGGCCA	3 cut(s)	156, 551, 728
MspA1I	CMGCKG	4 cut(s)	7, 160, 173, 196
MspI	CCGG	7 cut(s)	383, 419, 488, 585, 660, 690, 717
MspR9I	CCNGG	5 cut(s)	443, 489, 586, 718, 737
MvaI	CCWGG	2 cut(s)	443, 737
MwoI	GCNNNNNNNGC	5 cut(s)	108, 157, 162, 653, 683
NciI	CCSGG	3 cut(s)	489, 586, 718
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	555, 666, 696
NlaIII	CATG	1 cut(s)	531
NlaIV	GGNNCC	6 cut(s)	169, 192, 320, 440, 517, 763
NmeAIII	GCCGAG	2 cut(s)	274, 733
NspV	TTCGAA	1 cut(s)	342
PaqCI	CACCTGC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	4 cut(s)	393, 645, 675, 705
PfeI	GAWTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	304
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	6 cut(s)	6, 172, 195, 635, 658, 688
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	441, 735
PspEI	GGTNACC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	441, 735
PspN4I	GGNNCC	6 cut(s)	169, 192, 320, 440, 517, 763
PspPI	GGNCC	5 cut(s)	206, 468, 504, 516, 531
PspPPI	RGGWCCY	1 cut(s)	516
PstI	CTGCAG	2 cut(s)	370, 609
PsyI	GACNNNGTC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	185, 357
SatI	GCNGC	6 cut(s)	5, 171, 194, 634, 657, 687
Sau3AI	GATC	3 cut(s)	555, 666, 696
Sau96I	GGNCC	5 cut(s)	206, 468, 504, 516, 531
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	5 cut(s)	443, 489, 586, 718, 737
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	104, 124, 242, 367, 521, 714
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	366, 605
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	516
Sse9I	AATT	1 cut(s)	628
StyD4I	CCNGG	5 cut(s)	441, 487, 584, 716, 735
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	5 cut(s)	40, 190, 213, 278, 293
TaqI	TCGA	7 cut(s)	66, 104, 311, 342, 396, 426, 542
TasI	AATT	1 cut(s)	628
TauI	GCSGC	6 cut(s)	7, 173, 196, 636, 659, 689
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	2 cut(s)	185, 357
Tru9I	TTAA	2 cut(s)	185, 357
TscAI	CASTG	3 cut(s)	489, 614, 736
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	2 cut(s)	315, 567
TspRI	CASTG	3 cut(s)	489, 614, 736
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.