Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

42624782 .. 42628886

Gene Structure 4105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGCAAAGGAGTATTTGGGTTGTTCTTTTGGTGTTGTTAGTTGGTTTTACTTGGTTGTGCTGCTGTGAATCAGGTGAAGTATTTGCAAGAGCCGGACAACAATACCAAGTCCTGCAAAGCCAGAGGCAGCGATCTCCGCGTTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

49

Amino Acids

5.71

Weight (kDa)

9.21

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AciI	CCGC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	60, 127
AsuHPI	GGTGA	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	47, 139
BisI	GCNGC	2 cut(s)	61, 128
BlsI	GCNGC	2 cut(s)	62, 129
BseXI	GCAGC	2 cut(s)	47, 139
Bsh1236I	CGCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	139
BssMI	GATC	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	47, 139
CviJI	RGCY	2 cut(s)	92, 120
CviKI_1	RGCY	2 cut(s)	92, 120
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	61, 128
Fsp4HI	GCNGC	2 cut(s)	61, 128
GluI	GCNGC	2 cut(s)	61, 128
HapII	CCGG	1 cut(s)	93
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	4, 86, 115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	4 cut(s)	57, 106, 125, 134
Lsp1109I	GCAGC	2 cut(s)	47, 139
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MnlI	CCTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	148
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	62, 129
SaqAI	TTAA	1 cut(s)	148
SatI	GCNGC	2 cut(s)	61, 128
Sau3AI	GATC	1 cut(s)	131
SetI	ASST	1 cut(s)	76
SgeI	CNNG	7 cut(s)	63, 84, 99, 105, 119, 124, 133
SsiI	CCGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	148
Tru9I	TTAA	1 cut(s)	148
TseI	GCWGC	2 cut(s)	60, 127
TspDTI	ATGAA	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.