Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004686.1

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 676

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

atgggaggcagtgaggcacgccgattcgaagcctcttccattaaaccacctgcagaacagagacaaccggtcggcgtcggtgtcttcgcctccgtcttcgcttccgatcccgatacccccttggtccgcctcggatggagcaagcaggactccaggtacatggccaccatcatcatggatagcgccaaggctgtcatcctcaacatccgcttccctgctcatccgcccgattgcggcggagccgaagccgactttgccgccagaaagatcgctgaagctgaggttaccgggggcgtggccagtggcctggaagagggtggtggggaggacggagccgtcggagattttggggagcttggcggggtcgtagtggtcgcggcgagtttctggccgatgccggcgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

135

Amino Acids

13.89

Weight (kDa)

4.59

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
AasI	GACNNNNNNGTC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	1 cut(s)	377
AciI	CCGC	8 cut(s)	127, 208, 224, 234, 237, 258, 360, 377
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	3 cut(s)	162, 297, 389
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	233, 313
AgeI	ACCGGT	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	152, 306
AluBI	AGCT	2 cut(s)	278, 355
AluI	AGCT	2 cut(s)	278, 355
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	4 cut(s)	162, 297, 304, 389
AsiGI	ACCGGT	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	2 cut(s)	164, 299
BbsI	GAAGAC	2 cut(s)	76, 88
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	129, 176
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	154, 308
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	235, 258, 378
BlsI	GCNGC	3 cut(s)	236, 259, 379
Bme1390I	CCNGG	3 cut(s)	154, 289, 308
Bme18I	GGWCC	1 cut(s)	124
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	241, 334
BmrFI	CCNGG	3 cut(s)	154, 289, 308
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	76, 88
BpmI	CTGGAG	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	120, 130, 186, 288
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 313
Bse118I	RCCGGY	2 cut(s)	67, 397
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	154, 308
BseDI	CCNNGG	4 cut(s)	120, 130, 186, 288
BseGI	GGATG	4 cut(s)	140, 195, 204, 220
BseLI	CCNNNNNNNGG	2 cut(s)	233, 313
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	164, 299, 306, 391
BshTI	ACCGGT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	68, 288, 398
BslI	CCNNNNNNNGG	2 cut(s)	233, 313
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	164, 299, 306, 391
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	106, 267
BspACI	CCGC	8 cut(s)	127, 208, 224, 234, 237, 258, 360, 377
BspANI	GGCC	4 cut(s)	164, 299, 306, 391
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	241, 334
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	27
BsrFI	RCCGGY	2 cut(s)	67, 397
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	2 cut(s)	67, 397
BssECI	CCNNGG	4 cut(s)	120, 130, 186, 288
BssMI	GATC	2 cut(s)	106, 267
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	120, 186
Bst2UI	CCWGG	2 cut(s)	154, 308
Bst6I	CTCTTC	2 cut(s)	40, 306
BstACI	GRCGYC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	19, 143, 399
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	4 cut(s)	140, 195, 204, 220
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	109, 270
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	106, 267
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	154, 308
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	152, 287, 306
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	377
BstV2I	GAAGAC	2 cut(s)	76, 88
BstXI	CCANNNNNNTGG	3 cut(s)	160, 175, 307
BsuRI	GGCC	4 cut(s)	164, 299, 306, 391
BtsCI	GGATG	4 cut(s)	140, 195, 204, 220
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 307
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	19, 143, 399
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	2 cut(s)	67, 397
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	2 cut(s)	160, 175
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	108, 269
DpnII	GATC	2 cut(s)	106, 267
DrdI	GACNNNNNNGTC	1 cut(s)	335
DriI	GACNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	3 cut(s)	162, 297, 389
Eam1104I	CTCTTC	2 cut(s)	40, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EarI	CTCTTC	2 cut(s)	40, 306
EciI	GGCGGA	3 cut(s)	116, 213, 252
Eco130I	CCWWGG	2 cut(s)	120, 186
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	152, 306
EcoT14I	CCWWGG	2 cut(s)	120, 186
ErhI	CCWWGG	2 cut(s)	120, 186
FaeI	CATG	2 cut(s)	163, 178
FaiI	YATR	2 cut(s)	161, 176
FatI	CATG	2 cut(s)	159, 174
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	3 cut(s)	235, 258, 378
FokI	GGATG	4 cut(s)	147, 182, 191, 207
Fsp4HI	GCNGC	3 cut(s)	235, 258, 378
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	235, 258, 378
GsuI	CTGGAG	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	164, 299, 306, 391
HapII	CCGG	3 cut(s)	68, 288, 398
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	163, 178
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	24, 149
HpaII	CCGG	3 cut(s)	68, 288, 398
Hpy188I	TCNGA	3 cut(s)	106, 134, 341
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	80, 341
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	163, 178
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	397
KroNI	GCCGGC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	106, 267
LmnI	GCTCC	4 cut(s)	138, 239, 332, 352
LweI	GCATC	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	108, 269
MboI	GATC	2 cut(s)	106, 267
MboII	GAAGA	4 cut(s)	27, 76, 88, 323
MlsI	TGGCCA	2 cut(s)	164, 299
MluNI	TGGCCA	2 cut(s)	164, 299
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	8 cut(s)	7, 43, 100, 140, 209, 274, 307, 319
Mox20I	TGGCCA	2 cut(s)	164, 299
MroNI	GCCGGC	1 cut(s)	397
MscI	TGGCCA	2 cut(s)	164, 299
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	2 cut(s)	164, 299
MspI	CCGG	3 cut(s)	68, 288, 398
MspR9I	CCNGG	3 cut(s)	154, 289, 308
MvaI	CCWGG	2 cut(s)	154, 308
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	254
NaeI	GCCGGC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	106, 267
NgoMIV	GCCGGC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	163, 178
NlaIV	GGNNCC	2 cut(s)	241, 334
NspV	TTCGAA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	58
PdiI	GCCGGC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	236, 259, 379
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	152, 306
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	152, 306
PspN4I	GGNNCC	2 cut(s)	241, 334
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	235, 258, 378
Sau3AI	GATC	2 cut(s)	106, 267
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	154, 289, 308
SetI	ASST	5 cut(s)	52, 158, 280, 285, 357
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	173
SsiI	CCGC	8 cut(s)	127, 208, 224, 234, 237, 258, 360, 377
StyD4I	CCNGG	3 cut(s)	152, 287, 306
StyI	CCWWGG	2 cut(s)	120, 186
TaqI	TCGA	1 cut(s)	27
TauI	GCSGC	3 cut(s)	237, 260, 380
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	16, 307
TspGWI	ACGGA	2 cut(s)	82, 345
TspRI	CASTG	2 cut(s)	16, 307
VpaK11BI	GGWCC	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.