Rh7DG297300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000782
Physical Location & Seq
Reverse (-)
33870234 .. 33875561
5328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG297300.1

Sequence Viewer

Length: 522 bp
ATGCTTATTGATAAATGTTTATTGAATCATGCAGAGATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCCTCTTATAAGAGGTTTAGAGCAAGTGGATGCAGAGATTGGACGAAAGCGCACATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTATTCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGGAGTGTCGCGGCATTTAACAAGCAATAATTCTACTCAACTTGCAGAAATCGATGAAATGAGAGGAGATAAGAGATACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.74

Weight (kDa)

6.85

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 352
AccII CGCG 1 cut(s) 448
AciI CCGC 1 cut(s) 448
AclWI GGATC 3 cut(s) 104, 112, 289
AgsI TTSAA 3 cut(s) 25, 278, 394
Alw26I GTCTC 2 cut(s) 218, 419
AlwI GGATC 3 cut(s) 104, 112, 289
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 185, 390
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 31, 335
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 218, 419
BisI GCNGC 2 cut(s) 90, 449
BlsI GCNGC 2 cut(s) 91, 450
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 185, 390
Bsa29I ATCGAT 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 145, 346
BseRI GAGGAG 2 cut(s) 184, 516
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 352
BshVI ATCGAT 1 cut(s) 489
BsmAI GTCTC 2 cut(s) 218, 419
Bsp143I GATC 4 cut(s) 104, 109, 281, 298
BspACI CCGC 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 489
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 3 cut(s) 104, 112, 289
BspT107I GGYRCC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 4 cut(s) 104, 109, 281, 298
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 62
BstF5I GGATG 2 cut(s) 145, 346
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 107, 112, 284, 301
BstMAI GTCTC 2 cut(s) 218, 419
BstMBI GATC 4 cut(s) 104, 109, 281, 298
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 2 cut(s) 185, 390
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
Bsu15I ATCGAT 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 489
BtsCI GGATG 2 cut(s) 145, 346
CfoI GCGC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 489
CviAII CATG 1 cut(s) 29
DpnI GATC 4 cut(s) 106, 111, 283, 300
DpnII GATC 4 cut(s) 104, 109, 281, 298
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 119
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 90, 449
FokI GGATG 2 cut(s) 152, 353
Fsp4HI GCNGC 2 cut(s) 90, 449
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 90, 449
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 2 cut(s) 25, 286
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 3 cut(s) 109, 268, 403
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 4 cut(s) 32, 143, 215, 482
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 104, 109, 281, 298
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 293, 331
MalI GATC 4 cut(s) 106, 111, 283, 300
MboI GATC 4 cut(s) 104, 109, 281, 298
MboII GAAGA 6 cut(s) 53, 79, 190, 252, 390, 391
MfeI CAATTG 3 cut(s) 216, 228, 429
MflI RGATCY 1 cut(s) 104
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 7 cut(s) 48, 116, 123, 162, 331, 363, 494
MseI TTAA 1 cut(s) 455
MunI CAATTG 3 cut(s) 216, 228, 429
MvnI CGCG 1 cut(s) 448
NdeII GATC 4 cut(s) 104, 109, 281, 298
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 91, 450
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PsiI TTATAA 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 2 cut(s) 90, 449
Sau3AI GATC 4 cut(s) 104, 109, 281, 298
SchI GAGTC 1 cut(s) 295
SetI ASST 2 cut(s) 127, 295
SfaNI GCATC 1 cut(s) 130
SsiI CCGC 1 cut(s) 448
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 284, 489
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 6 cut(s) 80, 191, 251, 330, 392, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.