Rmu_sc0008563.1_g000004

DNA recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008563.1
OG0000782
Physical Location & Seq
Reverse (-)
7599 .. 10773
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008563.1_g000004.1.cds

Sequence Viewer

Length: 1299 bp
atggcaccaaagagtatcacaagagggatgaagagagtgttagagcaatgtgctgttgacagttatgatattaaacggagaagtcagcaaagaacaacaaaatgtgatcgtgcttcttctggtgaagataaatgtgatcaagttagttcaaggagatacaaaagaatgtctcatgtagagtttggtcaagcatcgaatcaatatcaaaatgtcattgcacctgagcattgtgagagacaatttatggatggcaacgaaattgatagtccagctgtagatgaacatcgatttatgatcagtgaagagctgaaaaaacagaaagaagggccagtgaatcagcaaatagtgctaagagaagatctcaatatcacactttggggtgatactgcaagagaatttaacgtagaagctgtccgaagtttgactgtacggtctgtaccagtgctcgctgttttcaccagtttgagagtcactctctttaaagagcgaattacaccatcaagtacaaatcacacttgcttcatcattgatccagaggttgcacaaagggatttatacagaaacgagttctcaaggccaggagacaaggttaagataattgcaaattcattcaagcaactaacacaagcagaactcaaggatcaacagagaaagactgttgctgacttgaatgcacttgatccagacctatatgcgaaagaaacagtctactccattgcttcaatatgtagattttctacgcatagccgctggtggtacaagggttgtccaagttgccacaaacaactgaagcaaaaagaagactctaatgaattgacctgcactaagcatgcgatccagacagctctgccatgttacagagtatatatgacaatcaaggacaaggacaattatgccacagtgatagtcatgggaaaggaaggtgaacaattatttggcagcacctgtgaagatctccttaacaagagaacatatccaactgaacacacattgccaaaagaaattaagcagacaataggacaaacataccagtttcacattaaggttaatcctaacagtgaactggttgtcaaaaatattgtcccagatccagaagcctctctcccactgacagaaaaagagccaacaagtgacacgccagatcagcttctctcagaaataaaaagaggaatccatgcaagcaaaagagctctatttacttctgaaccacacaaaacaagtaagaggcaatctgaacggggaacaaccacatcatcatcaggaaaaggaaggctgcctcagaaggataaatatgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
DUF223 Helitron_like_N PIF1 REPA_OB_2 Rep_fac-A_C

Protein Analysis

432

Amino Acids

49.42

Weight (kDa)

8.93

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 708
AciI CCGC 1 cut(s) 748
AclWI GGATC 5 cut(s) 524, 648, 674, 829, 1082
AcsI RAATTY 2 cut(s) 395, 604
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 4 cut(s) 429, 438, 505, 758
AgsI TTSAA 4 cut(s) 150, 613, 670, 723
AjnI CCWGG 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
AluBI AGCT 6 cut(s) 272, 307, 410, 845, 1147, 1190
AluI AGCT 6 cut(s) 272, 307, 410, 845, 1147, 1190
Alw21I GWGCWC 2 cut(s) 447, 1192
Alw26I GTCTC 3 cut(s) 174, 229, 576
AlwI GGATC 5 cut(s) 524, 648, 674, 829, 1082
AlwNI CAGNNNCTG 1 cut(s) 945
AoxI GGCC 2 cut(s) 326, 575
ApeKI GCWGC 2 cut(s) 939, 1273
ApoI RAATTY 2 cut(s) 395, 604
ArsI GACNNNNNNTTYG 2 cut(s) 1065, 1097
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 4 cut(s) 134, 392, 448, 935
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1192
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 447, 1192
BbvI GCAGC 2 cut(s) 951, 1260
BccI CCATC 2 cut(s) 242, 505
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 2 cut(s) 136, 294
BcoDI GTCTC 3 cut(s) 174, 229, 576
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 827
BglII AGATCT 2 cut(s) 358, 952
BisI GCNGC 3 cut(s) 748, 940, 1274
BlsI GCNGC 3 cut(s) 749, 941, 1275
Bme1390I CCNGG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 6 cut(s) 345, 377, 457, 489, 459, 491
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 556, 620
Bsa29I ATCGAT 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bse1I ACTGG 5 cut(s) 329, 440, 459, 1030, 1068
Bse3DI GCAATG 4 cut(s) 53, 213, 714, 989
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 286
BseGI GGATG 2 cut(s) 33, 253
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 4 cut(s) 53, 213, 714, 989
BseMII CTCAG 3 cut(s) 213, 1167, 1292
BseNI ACTGG 5 cut(s) 329, 440, 459, 1030, 1068
BseXI GCAGC 2 cut(s) 951, 1260
BsgI GTGCAG 1 cut(s) 805
BshFI GGCC 2 cut(s) 328, 577
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 447, 1192
BslFI GGGAC 1 cut(s) 1067
BsmAI GTCTC 3 cut(s) 174, 229, 576
BsmFI GGGAC 1 cut(s) 1067
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 2 cut(s) 328, 577
Bsp1286I GDGCHC 2 cut(s) 447, 1192
BspACI CCGC 1 cut(s) 748
BspANI GGCC 2 cut(s) 328, 577
BspCNI CTCAG 3 cut(s) 214, 1166, 1291
BspDI ATCGAT 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 5 cut(s) 524, 648, 674, 829, 1082
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 4 cut(s) 53, 213, 714, 989
BsrI ACTGG 5 cut(s) 329, 440, 459, 1030, 1068
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 7 cut(s) 62, 427, 432, 658, 706, 901, 1058
Bst6I CTCTTC 2 cut(s) 26, 297
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 447, 831, 1180
BstDEI CTNAG 5 cut(s) 222, 350, 825, 1153, 1278
BstF5I GGATG 2 cut(s) 33, 253
BstMAI GTCTC 3 cut(s) 174, 229, 576
BstMWI GCNNNNNNNGC 2 cut(s) 346, 1144
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 951, 1260
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 3 cut(s) 358, 952, 1087
BstYI RGATCY 3 cut(s) 358, 952, 1087
Bsu15I ATCGAT 1 cut(s) 286
BsuRI GGCC 2 cut(s) 328, 577
BsuTUI ATCGAT 1 cut(s) 286
BtsCI GGATG 2 cut(s) 33, 253
BtsIMutI CAGTG 6 cut(s) 304, 336, 447, 906, 1063, 1106
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 3 cut(s) 447, 831, 1180
CaiI CAGNNNCTG 1 cut(s) 945
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 286
Csp6I GTAC 4 cut(s) 428, 437, 504, 757
CviAII CATG 5 cut(s) 173, 830, 852, 910, 1175
CviQI GTAC 4 cut(s) 428, 437, 504, 757
DdeI CTNAG 5 cut(s) 222, 350, 825, 1153, 1278
DraI TTTAAA 1 cut(s) 481
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 26, 297
EarI CTCTTC 2 cut(s) 26, 297
Ecl136II GAGCTC 1 cut(s) 1190
Eco24I GRGCYC 1 cut(s) 1192
Eco53kI GAGCTC 1 cut(s) 1190
Eco57I CTGAAG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 1190
EcoRII CCWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 1192
FaeI CATG 5 cut(s) 176, 833, 855, 913, 1178
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 1067
FatI CATG 5 cut(s) 172, 829, 851, 909, 1174
FbaI TGATCA 2 cut(s) 136, 294
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 3 cut(s) 748, 940, 1274
FokI GGATG 2 cut(s) 40, 260
FriOI GRGCYC 1 cut(s) 1192
Fsp4HI GCNGC 3 cut(s) 748, 940, 1274
GluI GCNGC 3 cut(s) 748, 940, 1274
HaeIII GGCC 2 cut(s) 328, 577
Hin1II CATG 5 cut(s) 176, 833, 855, 913, 1178
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 5 cut(s) 196, 334, 468, 803, 1170
HphI GGTGA 4 cut(s) 134, 392, 448, 935
Hpy166II GTNNAC 4 cut(s) 58, 709, 926, 1061
Hpy188I TCNGA 5 cut(s) 416, 1156, 1204, 1234, 1281
Hpy188III TCNNGA 5 cut(s) 533, 683, 838, 1091, 1260
Hpy8I GTNNAC 4 cut(s) 58, 709, 926, 1061
HpyAV CCTTC 4 cut(s) 317, 914, 1263, 1276
HpyCH4III ACNGT 7 cut(s) 62, 427, 432, 658, 706, 901, 1058
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 7 cut(s) 218, 389, 542, 602, 674, 822, 1178
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 1144
HpyF3I CTNAG 5 cut(s) 222, 350, 825, 1153, 1278
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 5 cut(s) 176, 833, 855, 913, 1178
Ksp22I TGATCA 2 cut(s) 136, 294
LguI GCTCTTC 1 cut(s) 297
Lsp1109I GCAGC 2 cut(s) 951, 1260
LweI GCATC 1 cut(s) 200
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 3 cut(s) 469, 854, 1130
MboII GAAGA 7 cut(s) 43, 108, 137, 314, 368, 812, 962
MflI RGATCY 3 cut(s) 358, 952, 1087
MhlI GDGCHC 2 cut(s) 447, 1192
MlyI GAGTC 2 cut(s) 477, 797
MmeI TCCRAC 1 cut(s) 1001
MnlI CCTC 6 cut(s) 17, 529, 1108, 1160, 1218, 1287
MseI TTAA 8 cut(s) 72, 399, 480, 591, 960, 1005, 1041, 1047
MspA1I CMGCKG 2 cut(s) 272, 750
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 346, 1144
NlaIII CATG 5 cut(s) 176, 833, 855, 913, 1178
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 469, 1130
NspI RCATGY 1 cut(s) 833
PaeI GCATGC 1 cut(s) 833
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 3 cut(s) 196, 334, 1170
PkrI GCNGC 3 cut(s) 749, 941, 1275
PleI GAGTC 2 cut(s) 476, 797
PpsI GAGTC 2 cut(s) 476, 797
Psp124BI GAGCTC 1 cut(s) 1192
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 945
PsuI RGATCY 3 cut(s) 358, 952, 1087
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 4 cut(s) 429, 438, 505, 758
RsaNI GTAC 4 cut(s) 428, 437, 504, 757
SacI GAGCTC 1 cut(s) 1192
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 8 cut(s) 72, 399, 480, 591, 960, 1005, 1041, 1047
SatI GCNGC 3 cut(s) 748, 940, 1274
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 477, 797
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 2 cut(s) 447, 1192
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 571, 635
SmoI CTYRAG 2 cut(s) 571, 635
SphI GCATGC 1 cut(s) 833
SsiI CCGC 1 cut(s) 748
SspI AATATT 1 cut(s) 1078
SstI GAGCTC 1 cut(s) 1192
StyD4I CCNGG 1 cut(s) 577
TaaI ACNGT 7 cut(s) 62, 427, 432, 658, 706, 901, 1058
TaiI ACGT 1 cut(s) 405
TaqI TCGA 2 cut(s) 194, 286
TatI WGTACW 1 cut(s) 503
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 3 cut(s) 196, 334, 1170
Tru1I TTAA 8 cut(s) 72, 399, 480, 591, 960, 1005, 1041, 1047
Tru9I TTAA 8 cut(s) 72, 399, 480, 591, 960, 1005, 1041, 1047
TscAI CASTG 6 cut(s) 304, 336, 447, 906, 1063, 1113
TseFI GTSAC 2 cut(s) 469, 1130
TseI GCWGC 2 cut(s) 939, 1273
Tsp45I GTSAC 2 cut(s) 469, 1130
TspDTI ATGAA 5 cut(s) 44, 294, 511, 597, 825
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 6 cut(s) 304, 336, 447, 906, 1063, 1113
XapI RAATTY 2 cut(s) 395, 604
XceI RCATGY 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.