Rh5AG170700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000782
Physical Location & Seq
Forward (+)
18848656 .. 18854017
5362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG170700.1

Sequence Viewer

Length: 282 bp
ATGGACTCAAATCGAACGAAGATGGCAGCTAAGAATGTGACAAGAGGAATGAGGAGATTGTCAAAACATCGTGTTGCTGAAGATTGTGAAGATGAAGATAGAGTTGAGCGATCTAATTATGTTAACTCTAAGAGGTGGAGAACAATGTTTGGTCCACACATTGCTGAAGGATCGACTCGATTTCAGAATGCTGATGCATTTGAACATAGTGACAATCAATTTACGGTTGCAGAAGATCCTTTTTTTGGATATGATTCTTGGTTTTATATTCTGCGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

11.04

Weight (kDa)

6.83

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 178, 230
AcuI CTGAAG 2 cut(s) 99, 186
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwI GGATC 2 cut(s) 178, 230
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 152
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 16
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 245
BsmI GAATGC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 110, 170, 235
BspACI CCGC 1 cut(s) 274
BspPI GGATC 2 cut(s) 178, 230
BsrDI GCAATG 1 cut(s) 159
BssMI GATC 3 cut(s) 110, 170, 235
Bst4CI ACNGT 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 30, 129
BstKTI GATC 3 cut(s) 113, 173, 238
BstMBI GATC 3 cut(s) 110, 170, 235
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 152
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
DdeI CTNAG 2 cut(s) 30, 129
DpnI GATC 3 cut(s) 112, 172, 237
DpnII GATC 3 cut(s) 110, 170, 235
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 2 cut(s) 99, 186
EcoT22I ATGCAT 1 cut(s) 199
FaiI YATR 4 cut(s) 120, 207, 252, 267
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 5, 175, 254
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 124, 155
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 124, 155
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 197, 230
HpyF3I CTNAG 2 cut(s) 30, 129
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 3 cut(s) 110, 170, 235
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 37, 209
MalI GATC 3 cut(s) 112, 172, 237
MboI GATC 3 cut(s) 110, 170, 235
MboII GAAGA 5 cut(s) 31, 92, 101, 107, 245
MflI RGATCY 1 cut(s) 235
MluCI AATT 3 cut(s) 115, 218, 277
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 3 cut(s) 38, 45, 126
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 193
NdeII GATC 3 cut(s) 110, 170, 235
NmuCI GTSAC 2 cut(s) 37, 209
NsiI ATGCAT 1 cut(s) 199
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 235
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 110, 170, 235
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 169
SetI ASST 2 cut(s) 31, 137
SfaNI GCATC 1 cut(s) 184
SgeI CNNG 4 cut(s) 54, 83, 189, 270
SinI GGWCC 1 cut(s) 152
Sse9I AATT 3 cut(s) 115, 218, 277
SsiI CCGC 1 cut(s) 274
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 13, 173, 178
TasI AATT 3 cut(s) 115, 218, 277
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 2 cut(s) 37, 209
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 2 cut(s) 37, 209
TspDTI ATGAA 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.