Rh7DG364300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000782
Physical Location & Seq
Forward (+)
48606367 .. 48607985
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG364300.1

Sequence Viewer

Length: 342 bp
ATGAATATGATCGAATTAACTCAGAGAGATGGAAAACGAATAATGTTTGATCCTCAAATTGCTGAAGCAGCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGTAGAGCTGACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGAAGAGCACATTGAAATTGCCAAAGCCAAGGACAAAGTACGAGAGATAGAGTTGCCCTTATCTGAGGAAAAGCTTCATACTCAGATCAAAGACTTGGAGTATGTTATACTGCATAAGAGCATTCTGTTTATAAAATCCTTAAACAGATCAAACAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.97

Weight (kDa)

5.07

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 311, 340
AclWI GGATC 2 cut(s) 44, 155
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 101, 194
AluBI AGCT 2 cut(s) 125, 253
AluI AGCT 2 cut(s) 125, 253
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 2 cut(s) 44, 155
ApeKI GCWGC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 23
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 35, 234, 275
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 5 cut(s) 9, 49, 160, 264, 326
BspCNI CTCAG 3 cut(s) 34, 235, 274
BspPI GGATC 2 cut(s) 44, 155
BspQI GCTCTTC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 5 cut(s) 9, 49, 160, 264, 326
BssT1I CCWWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 21, 243, 261
BstKTI GATC 5 cut(s) 12, 52, 163, 267, 329
BstMBI GATC 5 cut(s) 9, 49, 160, 264, 326
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 218
CviJI RGCY 3 cut(s) 125, 206, 253
CviKI_1 RGCY 3 cut(s) 125, 206, 253
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 3 cut(s) 21, 243, 261
DpnI GATC 5 cut(s) 11, 51, 162, 266, 328
DpnII GATC 5 cut(s) 9, 49, 160, 264, 326
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaiI YATR 9 cut(s) 8, 79, 170, 258, 282, 287, 294, 311, 340
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 251
Hpy188I TCNGA 4 cut(s) 24, 109, 244, 264
Hpy188III TCNNGA 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 146, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 21, 243, 261
Kzo9I GATC 5 cut(s) 9, 49, 160, 264, 326
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 88
MalI GATC 5 cut(s) 11, 51, 162, 266, 328
MboI GATC 5 cut(s) 9, 49, 160, 264, 326
MboII GAAGA 3 cut(s) 170, 191, 194
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 4 cut(s) 14, 57, 96, 195
MnlI CCTC 2 cut(s) 63, 238
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 17, 320
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 5 cut(s) 9, 49, 160, 264, 326
NmuCI GTSAC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 70
PsiI TTATAA 2 cut(s) 311, 340
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 17, 320
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 5 cut(s) 9, 49, 160, 264, 326
SduI GDGCHC 1 cut(s) 189
SetI ASST 2 cut(s) 127, 255
SgeI CNNG 5 cut(s) 105, 188, 220, 233, 286
Sse9I AATT 4 cut(s) 14, 57, 96, 195
SspMI CTAG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 207
TaqI TCGA 1 cut(s) 12
TasI AATT 4 cut(s) 14, 57, 96, 195
Tru1I TTAA 2 cut(s) 17, 320
Tru9I TTAA 2 cut(s) 17, 320
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 17, 171, 245
TspRI CASTG 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.