Rw5G012360

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
14535180 .. 14541874
6695 bp
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UTR
Exon/CDS
Intron
Rw5G012360.1

Sequence Viewer

Length: 471 bp
ATGTGTCACGCCGCACAAATTCCTGAAGCATCAAATGAATGTGAGAATGTCAATGGATTTGAACACTCTGAGGAACTATTTCGAGGTGACAATCAAAATATTACAGAAGTTATCCCTCAAGAAGCTGCTTGGACAGCAATGGATTACGCTGAAGGTCATGATAGTGAAAGCGAAATGCAACAAATGGATAATTGTGACAATGTTACTGCAGTTAGTGAATATGGACATCATCAAGTTAGATCAGAGAGATGGAGAGAATTGTGTAGGTTAAGAATAACAAATAAGAACCAGATTTCATCGACTTCTGAATGTGGGAATGCCAATGCAACTATGAACCAAAATTTGCTTCTTCGTCAAAACTTGCATGCTAATAATGGAGGTACAACTGGTGAATGCTCACATTCATTTGGTCAAGCATCATATCAAAGAAGCAAGCAAGGATTAATCGTGAAATACGAAGATTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

4.82

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 18, 340
AcuI CTGAAG 2 cut(s) 45, 171
AfaI GTAC 1 cut(s) 382
AgsI TTSAA 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 18, 340
AseI ATTAAT 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 98, 401
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 12, 126
BlsI GCNGC 2 cut(s) 13, 127
BmsI GCATC 2 cut(s) 38, 425
BpuEI CTTGAG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 112
BsmI GAATGC 2 cut(s) 322, 398
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 391
BssMI GATC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 366, 434
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 366, 434
CciI TCATGA 1 cut(s) 157
Csp6I GTAC 1 cut(s) 381
CviAII CATG 2 cut(s) 158, 365
CviJI RGCY 1 cut(s) 125
CviKI_1 RGCY 1 cut(s) 125
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 45, 171
FaeI CATG 2 cut(s) 161, 368
FaiI YATR 5 cut(s) 159, 222, 332, 366, 421
FatI CATG 2 cut(s) 157, 364
Fnu4HI GCNGC 2 cut(s) 12, 126
Fsp4HI GCNGC 2 cut(s) 12, 126
GluI GCNGC 2 cut(s) 12, 126
Hin1II CATG 2 cut(s) 161, 368
HinfI GANTC 1 cut(s) 461
HphI GGTGA 2 cut(s) 98, 401
Hpy188I TCNGA 4 cut(s) 70, 244, 307, 466
Hpy188III TCNNGA 4 cut(s) 23, 119, 158, 448
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 178, 209, 326, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 161, 368
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 3 cut(s) 36, 302, 372
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 38, 425
MaeIII GTNAC 4 cut(s) 5, 86, 194, 202
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 341, 470
MluCI AATT 4 cut(s) 18, 190, 257, 340
MnlI CCTC 4 cut(s) 64, 77, 126, 371
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 3 cut(s) 269, 443, 469
MslI CAYNNNNRTG 1 cut(s) 162
Mva1269I GAATGC 2 cut(s) 322, 398
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 239
NlaIII CATG 2 cut(s) 161, 368
NmuCI GTSAC 3 cut(s) 5, 86, 194
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PctI GAATGC 2 cut(s) 322, 398
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 2 cut(s) 13, 127
PshBI ATTAAT 1 cut(s) 443
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 3 cut(s) 269, 443, 469
SatI GCNGC 2 cut(s) 12, 126
Sau3AI GATC 1 cut(s) 239
SetI ASST 5 cut(s) 88, 127, 157, 269, 382
SfaNI GCATC 2 cut(s) 38, 425
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SphI GCATGC 1 cut(s) 368
Sse9I AATT 4 cut(s) 18, 190, 257, 340
SsiI CCGC 1 cut(s) 12
SspI AATATT 1 cut(s) 100
TaqI TCGA 2 cut(s) 82, 299
TasI AATT 4 cut(s) 18, 190, 257, 340
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 269, 443, 469
Tru9I TTAA 3 cut(s) 269, 443, 469
TseFI GTSAC 3 cut(s) 5, 86, 194
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 3 cut(s) 5, 86, 194
TspDTI ATGAA 4 cut(s) 51, 285, 347, 393
VspI ATTAAT 1 cut(s) 443
XapI RAATTY 2 cut(s) 18, 340
XceI RCATGY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.