Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004964.1

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6690

Gene Structure 6690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1720 bp

atgggcgactgtgagctcccagctctaatcacaggtcgaatccaaaacctgcccttttcctcttcttcatcatctgacccacaaacccaccttgaagatgcaacaaacccatcttcttcgccgccaatttctgatgttctggagcaaaaggagtccctctccctcgccgtctccctccaagcccaccgtcaaaggcttcgggatcagaagacagatcgcgcagcccatcgactcgccgtagaggaaggacgctgtgggattcgatgtcgagaaggaagcaggcgaagccgttctgggagaggagatggttgtggcttgaaaagtctagctgatgttgttgccgtagccatggaccatgaagatgaggccacgtggaggagagacgaggggaagccattggcgggtgaagagcttgaggttgctaggagaggtgaagtaggatttggaggatttgatcccctgctgatcgtagtagtcttgctccggtgggtggtggtggtttctctctctatgctgctgctcaccactgtgaccatcaatgatctggaaagagggagaacgaagataagaaagaagagagatgaaattttggaagaaacaaaagcagggggagcacttcttaaggggcaagaaatagctgtgaagaggttatctagaagctctgggcaaggtgtcatggaatttaagaatgaggttgttttggtagccaagcttcagcacagaaatttagtgaagctactgggattttgctctgaaggagtagaaaagatacttatctatgaatttgtgcagaacaaaagccttgaccactttttatttgcagactcggatattcaagtaaagttggattggtcaagcagatacaagattataggtgggattactagagggattctctatctccatcaagattctcggcttaaaatcatacatcgcgatctcaaagcaagcaacatattgttagatggagaaatgaacccaaaaatatcagattttggaatggcaagaatatttgaagttgatcaaactcaaggaagcaccagaaggattgtcggaacttatttagtggtcctgttagagggcggtgtggaacgagaacagatatcaggaacagtgcgatcaaaatttgaaagtgctttcaacttggagatggaagataaaagtgtgaggaaaggaatgaagagattattactgccgtctgctgctgaaagaagtggatctgatcctcttataagaggtttagagcaagtggtgttgcattcgcacatcgttgaaacattgaatgaacctcagaatgtagatgcatttgaacataatgagaatgaagttagaggtgattatcagcatactgttgcacctctcagcaaagatgcagagattggacgaaagcgcacattgaggagaatgaagacattgttagaacagttttctgctgaaaattgtgcaattggtgagacaattgagcaaggaagaactgacgataatttgtttcattcagacattgttgaaggatcgagtcaacgtgacgatcaatttagaaatgatgaattactgaatgttgttaccgaggatggtcaagtggcaccaaagagtgtgatgaggcgaatgaagaaattgttattcaagtcttctgataaaaatgacaaaattggagagacaattgagcaaggtcgatgctcccaatcgtttggtcaagcattatatcaaagaagcagacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

573

Amino Acids

64.21

Weight (kDa)

6.71

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1232
Acc36I	ACCTGC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	1582
AccII	CGCG	2 cut(s)	219, 936
AciI	CCGC	3 cut(s)	122, 401, 1083
AclWI	GGATC	5 cut(s)	210, 449, 1217, 1225, 1519
AcsI	RAATTY	5 cut(s)	585, 680, 724, 782, 1124
AcuI	CTGAAG	2 cut(s)	698, 774
AcvI	CACGTG	1 cut(s)	372
AfiI	CCNNNNNNNGG	4 cut(s)	375, 401, 490, 1078
AflII	CTTAAG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	8 cut(s)	16, 23, 329, 412, 638, 660, 712, 736
AluI	AGCT	8 cut(s)	16, 23, 329, 412, 638, 660, 712, 736
Alw21I	GWGCWC	2 cut(s)	18, 616
Alw26I	GTCTC	4 cut(s)	175, 375, 1448, 1649
AlwI	GGATC	5 cut(s)	210, 449, 1217, 1225, 1519
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	221, 514, 517, 1202
ApoI	RAATTY	5 cut(s)	585, 680, 724, 782, 1124
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	2 cut(s)	221, 1392
AspS9I	GGNCC	2 cut(s)	352, 1069
AsuHPI	GGTGA	5 cut(s)	416, 443, 514, 1346, 1463
AvaII	GGWCC	2 cut(s)	352, 1069
BanI	GGYRCC	1 cut(s)	1582
BanII	GRGCYC	1 cut(s)	18
BarI	GAAGNNNNNNTAC	2 cut(s)	696, 728
BbrPI	CACGTG	1 cut(s)	372
BbsI	GAAGAC	3 cut(s)	215, 1415, 1620
Bbv12I	GWGCWC	2 cut(s)	18, 616
BbvI	GCAGC	4 cut(s)	233, 501, 504, 1189
BccI	CCATC	8 cut(s)	118, 234, 299, 542, 912, 959, 1144, 1565
BceAI	ACGGC	5 cut(s)	152, 221, 273, 326, 1180
BclI	TGATCA	1 cut(s)	1021
BcoDI	GTCTC	4 cut(s)	175, 375, 1448, 1649
BfaI	CTAG	4 cut(s)	326, 423, 654, 885
BfrI	CTTAAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	5 cut(s)	122, 222, 515, 518, 1203
BlsI	GCNGC	5 cut(s)	123, 223, 516, 519, 1204
Bme18I	GGWCC	2 cut(s)	352, 1069
BmgT120I	GGNCC	2 cut(s)	352, 1069
BmiI	GGNNCC	1 cut(s)	1584
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	4 cut(s)	88, 1291, 1360, 1664
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	3 cut(s)	215, 1415, 1620
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 879, 911
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	2 cut(s)	434, 1014
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	773
BsaJI	CCNNGG	2 cut(s)	348, 1566
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	4 cut(s)	375, 401, 490, 1078
Bse1I	ACTGG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	348, 1566
BseGI	GGATG	1 cut(s)	1576
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	4 cut(s)	375, 401, 490, 1078
BseMII	CTCAG	2 cut(s)	1304, 1375
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	3 cut(s)	315, 391, 1414
BseXI	GCAGC	4 cut(s)	233, 501, 504, 1189
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	2 cut(s)	219, 936
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	1582
BsiHKAI	GWGCWC	2 cut(s)	18, 616
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	4 cut(s)	375, 401, 490, 1078
BsmAI	GTCTC	4 cut(s)	175, 375, 1448, 1649
BsmBI	CGTCTC	2 cut(s)	175, 375
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	1258
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	18, 616
Bsp19I	CCATGG	1 cut(s)	348
Bsp68I	TCGCGA	1 cut(s)	936
BspACI	CCGC	3 cut(s)	122, 401, 1083
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	1303, 1374
BspFNI	CGCG	2 cut(s)	219, 936
BspLI	GGNNCC	1 cut(s)	1584
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	5 cut(s)	210, 449, 1217, 1225, 1519
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	1582
BspTI	CTTAAG	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	348, 1566
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	6 cut(s)	11, 188, 529, 1114, 1351, 1425
Bst6I	CTCTTC	5 cut(s)	67, 402, 569, 638, 1175
BstAFI	CTTAAG	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	281, 949
BstDEI	CTNAG	2 cut(s)	1290, 1361
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	1 cut(s)	1576
BstFNI	CGCG	2 cut(s)	219, 936
BstHHI	GCGC	2 cut(s)	221, 1392
BstMAI	GTCTC	4 cut(s)	175, 375, 1448, 1649
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 611
BstUI	CGCG	2 cut(s)	219, 936
BstV1I	GCAGC	4 cut(s)	233, 501, 504, 1189
BstV2I	GAAGAC	3 cut(s)	215, 1415, 1620
BstX2I	RGATCY	1 cut(s)	1217
BstXI	CCANNNNNNTGG	1 cut(s)	1688
BstYI	RGATCY	1 cut(s)	1217
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	917
BtsCI	GGATG	1 cut(s)	1576
BtsIMutI	CAGTG	2 cut(s)	525, 1119
BtuMI	TCGCGA	1 cut(s)	936
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	281, 949
CfoI	GCGC	2 cut(s)	221, 1392
Cfr13I	GGNCC	2 cut(s)	352, 1069
CseI	GACGC	1 cut(s)	258
CviAII	CATG	3 cut(s)	349, 356, 676
DdeI	CTNAG	2 cut(s)	1290, 1361
Eam1104I	CTCTTC	5 cut(s)	67, 402, 569, 638, 1175
EarI	CTCTTC	5 cut(s)	67, 402, 569, 638, 1175
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	1104
Eco47I	GGWCC	2 cut(s)	352, 1069
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	698, 774
Eco72I	CACGTG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoRV	GATATC	1 cut(s)	1104
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	1306
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	2 cut(s)	175, 375
FaeI	CATG	3 cut(s)	352, 359, 679
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	348, 355, 675
FauI	CCCGC	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	5 cut(s)	122, 222, 515, 518, 1203
FokI	GGATG	1 cut(s)	1583
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	5 cut(s)	122, 222, 515, 518, 1203
FspBI	CTAG	4 cut(s)	326, 423, 654, 885
GlaI	GCGC	2 cut(s)	220, 1391
GluI	GCNGC	5 cut(s)	122, 222, 515, 518, 1203
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	484
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	221, 1392
Hin1II	CATG	3 cut(s)	352, 359, 679
Hin6I	GCGC	2 cut(s)	219, 1390
HinP1I	GCGC	2 cut(s)	219, 1390
HincII	GTYRAC	1 cut(s)	1520
HindII	GTYRAC	1 cut(s)	1520
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	8 cut(s)	39, 152, 231, 259, 824, 892, 911, 1516
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	5 cut(s)	416, 443, 514, 1346, 1463
Hpy166II	GTNNAC	1 cut(s)	1520
Hpy188III	TCNNGA	8 cut(s)	140, 200, 269, 545, 654, 908, 935, 1107
Hpy8I	GTNNAC	1 cut(s)	1520
HpyAV	CCTTC	5 cut(s)	239, 266, 749, 1038, 1502
HpyCH4III	ACNGT	6 cut(s)	11, 188, 529, 1114, 1351, 1425
HpyCH4IV	ACGT	2 cut(s)	371, 1522
HpyCH4V	TGCA	8 cut(s)	101, 790, 821, 1258, 1304, 1355, 1373, 1445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 611
HpyF3I	CTNAG	2 cut(s)	1290, 1361
HpySE526I	ACGT	2 cut(s)	371, 1522
Hsp92II	CATG	3 cut(s)	352, 359, 679
HspAI	GCGC	2 cut(s)	219, 1390
Ksp22I	TGATCA	1 cut(s)	1021
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	5 cut(s)	21, 142, 486, 611, 1682
Lsp1109I	GCAGC	4 cut(s)	233, 501, 504, 1189
LweI	GCATC	4 cut(s)	88, 1291, 1360, 1664
MaeI	CTAG	4 cut(s)	326, 423, 654, 885
MaeII	ACGT	2 cut(s)	371, 1522
MaeIII	GTNAC	3 cut(s)	529, 1523, 1561
MfeI	CAATTG	3 cut(s)	1446, 1458, 1659
MflI	RGATCY	1 cut(s)	1217
MhlI	GDGCHC	2 cut(s)	18, 616
MlyI	GAGTC	4 cut(s)	161, 225, 818, 1525
MmeI	TCCRAC	2 cut(s)	825, 1033
Mph1103I	ATGCAT	1 cut(s)	1306
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	3 cut(s)	621, 684, 921
MslI	CAYNNNNRTG	2 cut(s)	360, 527
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	1 cut(s)	484
MunI	CAATTG	3 cut(s)	1446, 1458, 1659
Mva1269I	GAATGC	1 cut(s)	1258
MvnI	CGCG	2 cut(s)	219, 936
MwoI	GCNNNNNNNGC	2 cut(s)	285, 611
NcoI	CCATGG	1 cut(s)	348
NlaIII	CATG	3 cut(s)	352, 359, 679
NlaIV	GGNNCC	1 cut(s)	1584
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	2 cut(s)	529, 1523
NruI	TCGCGA	1 cut(s)	936
NsiI	ATGCAT	1 cut(s)	1306
OliI	CACNNNNGTG	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	1 cut(s)	1258
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	4 cut(s)	39, 259, 892, 911
PkrI	GCNGC	5 cut(s)	123, 223, 516, 519, 1204
PleI	GAGTC	4 cut(s)	160, 225, 818, 1524
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	4 cut(s)	160, 225, 818, 1524
Ppu21I	YACGTR	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	1232
Psp124BI	GAGCTC	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	1584
PspPI	GGNCC	2 cut(s)	352, 1069
PsuI	RGATCY	1 cut(s)	1217
RruI	TCGCGA	1 cut(s)	936
RseI	CAYNNNNRTG	2 cut(s)	360, 527
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	621, 684, 921
SatI	GCNGC	5 cut(s)	122, 222, 515, 518, 1203
Sau96I	GGNCC	2 cut(s)	352, 1069
SchI	GAGTC	4 cut(s)	161, 225, 818, 1525
SduI	GDGCHC	2 cut(s)	18, 616
SfaNI	GCATC	4 cut(s)	88, 1291, 1360, 1664
SinI	GGWCC	2 cut(s)	352, 1069
SmiMI	CAYNNNNRTG	2 cut(s)	360, 527
SmlI	CTYRAG	3 cut(s)	413, 620, 1029
SmoI	CTYRAG	3 cut(s)	413, 620, 1029
SsiI	CCGC	3 cut(s)	122, 401, 1083
SspI	AATATT	1 cut(s)	1011
SspMI	CTAG	4 cut(s)	326, 423, 654, 885
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	6 cut(s)	11, 188, 529, 1114, 1351, 1425
TaiI	ACGT	2 cut(s)	374, 1525
TaqI	TCGA	6 cut(s)	37, 229, 262, 268, 1514, 1672
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	4 cut(s)	39, 259, 892, 911
Tru1I	TTAA	3 cut(s)	621, 684, 921
Tru9I	TTAA	3 cut(s)	621, 684, 921
TscAI	CASTG	2 cut(s)	532, 1119
TseFI	GTSAC	2 cut(s)	529, 1523
TseI	GCWGC	4 cut(s)	221, 514, 517, 1202
Tsp45I	GTSAC	2 cut(s)	529, 1523
TspRI	CASTG	2 cut(s)	532, 1119
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	352, 1069
XagI	CCTNNNNNAGG	1 cut(s)	1076
XapI	RAATTY	5 cut(s)	585, 680, 724, 782, 1124
XbaI	TCTAGA	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	4 cut(s)	326, 423, 654, 885
Zsp2I	ATGCAT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.