Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

2414376 .. 2416027

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTACAGTTGACATGGGAGGCAGTGAGGCACGCCGATTCAAAGCCTCTTCCATTAAACCACCTGTAGAACAGAGACAACCGGTCGGCGTCCTCTATATCTGCTTCCCTGCTCATCCGGTCGTCAAGTTGCAGAGGCACCAGGCCATTGTCAAAGCCATTGCTGGGGCAAACCAGTCTGCACTGCCGGGGATGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTTGAGGGTGGCCACGATCCCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGAGCAACTGCAGTGGTGTTCTTCTCAGCCCAATTGCGGCGGAGCCAAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGGTGGCCTGGAAGAGGGTGGTGGGGAGGACGGAGCCGTCGGAGATTTTGGGGAGCTTGGCGGGGTCGTAGTCGCGGCGAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

157

Amino Acids

16.15

Weight (kDa)

5.89

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	461
AciI	CCGC	5 cut(s)	333, 336, 357, 447, 461
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	7 cut(s)	165, 212, 213, 244, 284, 332, 400
AgeI	ACCGGT	2 cut(s)	82, 386
AgsI	TTSAA	1 cut(s)	43
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	141, 393
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	6 cut(s)	144, 203, 231, 249, 266, 391
AsiGI	ACCGGT	2 cut(s)	82, 386
AspS9I	GGNCC	3 cut(s)	204, 216, 231
AsuC2I	CCSGG	2 cut(s)	189, 286
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	143, 395
BcnI	CCSGG	2 cut(s)	189, 286
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	472
BfmI	CTRYAG	2 cut(s)	66, 305
BisI	GCNGC	3 cut(s)	334, 357, 462
BlsI	GCNGC	3 cut(s)	335, 358, 463
Bme1390I	CCNGG	4 cut(s)	143, 189, 286, 395
Bme18I	GGWCC	1 cut(s)	216
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	204, 216, 231
BmiI	GGNNCC	4 cut(s)	140, 217, 340, 421
BmrFI	CCNGG	4 cut(s)	143, 189, 286, 395
BpuMI	CCSGG	2 cut(s)	189, 286
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	188, 227, 285, 378
BsaWI	WCCGGW	3 cut(s)	82, 118, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	7 cut(s)	165, 212, 213, 244, 284, 332, 400
Bse118I	RCCGGY	2 cut(s)	82, 386
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	143, 395
BseDI	CCNNGG	4 cut(s)	188, 227, 285, 378
BseGI	GGATG	2 cut(s)	115, 198
BseLI	CCNNNNNNNGG	7 cut(s)	165, 212, 213, 244, 284, 332, 400
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	2 cut(s)	87, 123
BshFI	GGCC	6 cut(s)	146, 205, 233, 251, 268, 393
BshNI	GGYRCC	1 cut(s)	138
BshTI	ACCGGT	2 cut(s)	82, 386
BsiEI	CGRYCG	2 cut(s)	87, 123
BsiSI	CCGG	6 cut(s)	83, 119, 188, 285, 360, 387
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	7 cut(s)	165, 212, 213, 244, 284, 332, 400
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	6 cut(s)	146, 205, 233, 251, 268, 393
Bsp143I	GATC	2 cut(s)	255, 366
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	5 cut(s)	333, 336, 357, 447, 461
BspANI	GGCC	6 cut(s)	146, 205, 233, 251, 268, 393
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	4 cut(s)	140, 217, 340, 421
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	2 cut(s)	82, 386
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	2 cut(s)	82, 386
BssECI	CCNNGG	4 cut(s)	188, 227, 285, 378
BssMI	GATC	2 cut(s)	255, 366
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	143, 395
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	55, 393
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	382
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	115, 198
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	2 cut(s)	258, 369
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	255, 366
BstMCI	CGRYCG	2 cut(s)	87, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	143, 395
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	4 cut(s)	141, 187, 284, 393
BstSFI	CTRYAG	2 cut(s)	66, 305
BstUI	CGCG	1 cut(s)	461
BsuRI	GGCC	6 cut(s)	146, 205, 233, 251, 268, 393
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	115, 198
BtsI	GCAGTG	3 cut(s)	31, 182, 314
BtsIMutI	CAGTG	3 cut(s)	31, 182, 314
Cac8I	GCNNGC	1 cut(s)	34
Cfr10I	RCCGGY	2 cut(s)	82, 386
Cfr13I	GGNCC	3 cut(s)	204, 216, 231
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	6
CspAI	ACCGGT	2 cut(s)	82, 386
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	2 cut(s)	16, 228
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	257, 368
DpnII	GATC	2 cut(s)	255, 366
DrdI	GACNNNNNNGTC	1 cut(s)	422
DriI	GACNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	55, 393
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	2 cut(s)	55, 393
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	204, 216
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	141, 393
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	19, 231
FaiI	YATR	3 cut(s)	17, 99, 229
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	15, 227
FauI	CCCGC	1 cut(s)	440
Fnu4HI	GCNGC	3 cut(s)	334, 357, 462
FokI	GGATG	2 cut(s)	102, 205
Fsp4HI	GCNGC	3 cut(s)	334, 357, 462
FspBI	CTAG	1 cut(s)	472
GluI	GCNGC	3 cut(s)	334, 357, 462
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	6 cut(s)	146, 205, 233, 251, 268, 393
HapII	CCGG	6 cut(s)	83, 119, 188, 285, 360, 387
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	19, 231
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	39, 196
HpaII	CCGG	6 cut(s)	83, 119, 188, 285, 360, 387
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	428
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	133, 182, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	19, 231
Kzo9I	GATC	2 cut(s)	255, 366
LmnI	GCTCC	3 cut(s)	338, 419, 439
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	257, 368
MboI	GATC	2 cut(s)	255, 366
MboII	GAAGA	3 cut(s)	42, 309, 410
MfeI	CAATTG	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	6 cut(s)	83, 119, 188, 285, 360, 387
MspR9I	CCNGG	4 cut(s)	143, 189, 286, 395
MunI	CAATTG	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	143, 395
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	189, 286
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	255, 366
NlaIII	CATG	2 cut(s)	19, 231
NlaIV	GGNNCC	4 cut(s)	140, 217, 340, 421
NmeAIII	GCCGAG	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	39
PinAI	ACCGGT	2 cut(s)	82, 386
PkrI	GCNGC	3 cut(s)	335, 358, 463
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	141, 393
PspEI	GGTNACC	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	141, 393
PspN4I	GGNNCC	4 cut(s)	140, 217, 340, 421
PspPI	GGNCC	3 cut(s)	204, 216, 231
PspPPI	RGGWCCY	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	334, 357, 462
Sau3AI	GATC	2 cut(s)	255, 366
Sau96I	GGNCC	3 cut(s)	204, 216, 231
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	143, 189, 286, 395
SetI	ASST	4 cut(s)	67, 221, 384, 444
SfcI	CTRYAG	2 cut(s)	66, 305
SinI	GGWCC	1 cut(s)	216
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	5 cut(s)	333, 336, 357, 447, 461
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	4 cut(s)	141, 187, 284, 393
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	1 cut(s)	328
TauI	GCSGC	3 cut(s)	336, 359, 464
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	31, 189, 314
TspGWI	ACGGA	2 cut(s)	267, 432
TspRI	CASTG	3 cut(s)	31, 189, 314
VpaK11BI	GGWCC	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.