Rh1AG255100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
47115099 .. 47119320
4222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG255100.1

Sequence Viewer

Length: 603 bp
ATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCCTCTTATAAGAGGTTTAGAGCAAGTGGTGTTGCATTCACACATCGTTGAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGGTGATTATCAGCATACTGTTGCACCTCTCAGCAAAGATGCAGAGATTGGACGAAAGCGCACATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTCATGAGGCGAATGAAGAAATTGTTATTCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGGAGTGTCGCGGCATTTAACAAGCAATAATTCTACTCAACTTGCAGAAATCGATGAATTGAGAGGAGATAAGAGATACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.79

Weight (kDa)

5.92

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 433
AccII CGCG 1 cut(s) 529
AciI CCGC 1 cut(s) 529
AclWI GGATC 3 cut(s) 68, 76, 370
AgsI TTSAA 5 cut(s) 125, 133, 161, 359, 475
Alw26I GTCTC 2 cut(s) 299, 500
AlwI GGATC 3 cut(s) 68, 76, 370
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 197, 314
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 266, 471
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 299, 500
BisI GCNGC 2 cut(s) 54, 530
BlsI GCNGC 2 cut(s) 55, 531
BmiI GGNNCC 1 cut(s) 435
BmsI GCATC 2 cut(s) 142, 211
BpiI GAAGAC 2 cut(s) 266, 471
Bsa29I ATCGAT 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 417
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 155, 226
BseRI GAGGAG 2 cut(s) 265, 597
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 433
BshVI ATCGAT 1 cut(s) 570
BsmAI GTCTC 2 cut(s) 299, 500
BsmI GAATGC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 68, 73, 362, 379
BspACI CCGC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 154, 225
BspDI ATCGAT 1 cut(s) 570
BspFNI CGCG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 3 cut(s) 68, 76, 370
BspT107I GGYRCC 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 4 cut(s) 68, 73, 362, 379
Bst4CI ACNGT 2 cut(s) 202, 276
Bst6I CTCTTC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 141, 212
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 4 cut(s) 71, 76, 365, 382
BstMAI GTCTC 2 cut(s) 299, 500
BstMBI GATC 4 cut(s) 68, 73, 362, 379
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 266, 471
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 570
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 1 cut(s) 427
CciI TCATGA 1 cut(s) 447
CfoI GCGC 1 cut(s) 243
ClaI ATCGAT 1 cut(s) 570
CviAII CATG 1 cut(s) 448
DdeI CTNAG 2 cut(s) 141, 212
DpnI GATC 4 cut(s) 70, 75, 364, 381
DpnII GATC 4 cut(s) 68, 73, 362, 379
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 1 cut(s) 451
FaiI YATR 4 cut(s) 83, 165, 198, 449
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 54, 530
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 54, 530
GlaI GCGC 1 cut(s) 242
GluI GCNGC 2 cut(s) 54, 530
HhaI GCGC 1 cut(s) 243
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HinfI GANTC 1 cut(s) 367
HphI GGTGA 2 cut(s) 197, 314
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 4 cut(s) 73, 144, 349, 484
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 202, 276
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 6 cut(s) 109, 155, 206, 224, 296, 563
HpyF3I CTNAG 2 cut(s) 141, 212
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 68, 73, 362, 379
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 142, 211
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 374, 412
MalI GATC 4 cut(s) 70, 75, 364, 381
MboI GATC 4 cut(s) 68, 73, 362, 379
MboII GAAGA 6 cut(s) 17, 43, 271, 333, 471, 472
MfeI CAATTG 3 cut(s) 297, 309, 510
MflI RGATCY 1 cut(s) 68
MlyI GAGTC 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 536
MunI CAATTG 3 cut(s) 297, 309, 510
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 1 cut(s) 529
NdeII GATC 4 cut(s) 68, 73, 362, 379
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 157
PagI TCATGA 1 cut(s) 447
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 55, 531
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PsiI TTATAA 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 435
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 2 cut(s) 54, 530
Sau3AI GATC 4 cut(s) 68, 73, 362, 379
SchI GAGTC 1 cut(s) 376
SetI ASST 5 cut(s) 91, 142, 187, 211, 376
SfaNI GCATC 2 cut(s) 142, 211
SsiI CCGC 1 cut(s) 529
TaaI ACNGT 2 cut(s) 202, 276
TaiI ACGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 365, 570
TauI GCSGC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 8 cut(s) 44, 150, 189, 272, 332, 411, 473, 588
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.