Rroxscaffold_2G00077840

transparent testa glabra 1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
1308668 .. 1313737
5070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077840.1

Sequence Viewer

Length: 894 bp
ATGGAGAGTGCCATTTGCATCTTGGAAATGGAAGAAATTGTCAGCTCGAGGAAAAAAAGATACCATGCGCACCTAAGGAATGATCAATTGTGGCTCGGAACCAAAATCTGGATGATTGAATCACCTCTAATGCATATTTTCAAGATGACAATTTCGAATCAAGTACACCGCCCTATTCAATCATTTACTTTATCCTTCTTGTCTAAGATCTCTTCAATAGCTTTGTTATTTGATCCCTCTTTGAATCGAGACCAGTTTTTGGGACGATTCATCACCCGGCAGCGGTGGTGTAACATTAATTACAATACTTTGAGCCTAATCCTAGCCATTGAACACTCGGTGGAGTCCTCTTCCATTAAACCACCTGCAGAACAGAAACAACCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCTTGGGCCAACCCGTCGAGGGTGGCCACGATACCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGAGCAACTGCAGTGGTGTGGTTCTCTACCCGATTGCGGCGGAGCCGAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGGGGGCGTGGCCAGTGGCCTGGAAGAGGGTGGTGGGGAGGACGGAGCCGTCGGAGATTTTGGGGAGCTTGGCAGGGTCGTAGTCGCGGCGAGTTTCTGGCCGACGCTGGCGAGGCCGATATATATATATATATATATATATATATATATATATATTAAAAATCAATTAACGGTGCAGATCAAAAGCTGCAGAGTGTACGGTCCAGATCGCACCTCTAAAAATTATTTTCTAATAAAGAATTGA

Protein Analysis

297

Amino Acids

33.02

Weight (kDa)

8.22

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 373
AasI GACNNNNNNGTC 1 cut(s) 698
Acc16I TGCGCA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 2 cut(s) 108, 259
AccII CGCG 1 cut(s) 737
AciI CCGC 6 cut(s) 169, 283, 597, 600, 621, 737
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 3 cut(s) 513, 660, 749
AdeI CACNNNGTG 1 cut(s) 340
AfaI GTAC 2 cut(s) 165, 848
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 6 cut(s) 119, 142, 179, 216, 244, 332
AjnI CCWGG 2 cut(s) 405, 669
AluBI AGCT 4 cut(s) 45, 221, 718, 837
AluI AGCT 4 cut(s) 45, 221, 718, 837
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 280, 837
AseI ATTAAT 1 cut(s) 297
AsiGI ACCGGT 1 cut(s) 382
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 5 cut(s) 432, 468, 480, 495, 851
AsuC2I CCSGG 4 cut(s) 277, 453, 550, 652
AsuHPI GGTGA 3 cut(s) 114, 265, 647
AsuII TTCGAA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 2 cut(s) 480, 851
AxyI CCTNAGG 1 cut(s) 74
BalI TGGCCA 2 cut(s) 515, 662
BanI GGYRCC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 292, 824
BceAI ACGGC 2 cut(s) 407, 683
BciT130I CCWGG 2 cut(s) 407, 671
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 4 cut(s) 277, 453, 550, 652
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 3 cut(s) 366, 569, 838
BfuAI ACCTGC 1 cut(s) 373
BglII AGATCT 1 cut(s) 207
BisI GCNGC 5 cut(s) 281, 598, 621, 738, 838
BlsI GCNGC 5 cut(s) 282, 599, 622, 739, 839
Bme1390I CCNGG 6 cut(s) 277, 407, 453, 550, 652, 671
Bme18I GGWCC 2 cut(s) 480, 851
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 5 cut(s) 432, 468, 480, 495, 851
BmiI GGNNCC 5 cut(s) 100, 404, 481, 604, 697
BmrFI CCNGG 6 cut(s) 277, 407, 453, 550, 652, 671
BmsI GCATC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 155
BpuMI CCSGG 4 cut(s) 277, 453, 550, 652
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 5 cut(s) 452, 491, 549, 642, 651
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 253, 663
Bse21I CCTNAGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 407, 671
BseDI CCNNGG 5 cut(s) 452, 491, 549, 642, 651
BseGI GGATG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 253, 663
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 292, 824
BsgI GTGCAG 2 cut(s) 429, 845
Bsh1236I CGCG 1 cut(s) 737
Bsh1285I CGRYCG 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 6 cut(s) 277, 383, 452, 549, 624, 651
BslFI GGGAC 3 cut(s) 276, 469, 493
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 3 cut(s) 276, 469, 493
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 6 cut(s) 82, 207, 232, 630, 828, 856
BspACI CCGC 6 cut(s) 169, 283, 597, 600, 621, 737
BspFNI CGCG 1 cut(s) 737
BspLI GGNNCC 5 cut(s) 100, 404, 481, 604, 697
BspMAI CTGCAG 3 cut(s) 370, 573, 842
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 2 cut(s) 253, 663
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 5 cut(s) 452, 491, 549, 642, 651
BssMI GATC 6 cut(s) 82, 207, 232, 630, 828, 856
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 407, 671
Bst4CI ACNGT 2 cut(s) 823, 851
Bst6I CTCTTC 3 cut(s) 217, 355, 669
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 412, 759
BstDEI CTNAG 2 cut(s) 74, 204
BstEII GGTNACC 1 cut(s) 646
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 6 cut(s) 85, 210, 235, 633, 831, 859
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 6 cut(s) 82, 207, 232, 630, 828, 856
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 617, 763
BstNI CCWGG 2 cut(s) 407, 671
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 6 cut(s) 275, 405, 451, 548, 650, 669
BstSFI CTRYAG 3 cut(s) 366, 569, 838
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 292, 824
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 1 cut(s) 207
Bsu36I CCTNAGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 2 cut(s) 446, 578
BtsIMutI CAGTG 3 cut(s) 446, 578, 670
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 412, 759
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 5 cut(s) 432, 468, 480, 495, 851
CseI GACGC 2 cut(s) 403, 763
Csp6I GTAC 2 cut(s) 164, 847
CspAI ACCGGT 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 554, 589
CviAII CATG 1 cut(s) 65
CviQI GTAC 2 cut(s) 164, 847
DdeI CTNAG 2 cut(s) 74, 204
DpnI GATC 6 cut(s) 84, 209, 234, 632, 830, 858
DpnII GATC 6 cut(s) 82, 207, 232, 630, 828, 856
DraIII CACNNNGTG 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 3 cut(s) 513, 660, 749
Eam1104I CTCTTC 3 cut(s) 217, 355, 669
EarI CTCTTC 3 cut(s) 217, 355, 669
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 480, 851
Eco81I CCTNAGG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO109I RGGNCCY 2 cut(s) 468, 480
EcoO65I GGTNACC 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 405, 669
EcoT14I CCWWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 1 cut(s) 68
FaqI GGGAC 3 cut(s) 276, 469, 493
FatI CATG 1 cut(s) 64
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 281, 598, 621, 738, 838
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 281, 598, 621, 738, 838
FspAI RTGCGCAY 1 cut(s) 69
FspBI CTAG 1 cut(s) 323
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 5 cut(s) 281, 598, 621, 738, 838
HapII CCGG 6 cut(s) 277, 383, 452, 549, 624, 651
HgaI GACGC 2 cut(s) 403, 763
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 6 cut(s) 119, 157, 244, 267, 344, 460
HpaII CCGG 6 cut(s) 277, 383, 452, 549, 624, 651
HphI GGTGA 3 cut(s) 114, 265, 647
Hpy166II GTNNAC 2 cut(s) 166, 847
Hpy188I TCNGA 2 cut(s) 98, 704
Hpy188III TCNNGA 4 cut(s) 109, 142, 248, 854
Hpy8I GTNNAC 2 cut(s) 166, 847
Hpy99I CGWCG 4 cut(s) 392, 508, 704, 757
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 823, 851
HpyCH4V TGCA 8 cut(s) 18, 133, 368, 397, 446, 571, 826, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 763
HpyF3I CTNAG 2 cut(s) 74, 204
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 6 cut(s) 82, 207, 232, 630, 828, 856
LmnI GCTCC 3 cut(s) 602, 695, 715
Lsp1109I GCAGC 2 cut(s) 292, 824
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 290, 646
MalI GATC 6 cut(s) 84, 209, 234, 632, 830, 858
MboI GATC 6 cut(s) 82, 207, 232, 630, 828, 856
MboII GAAGA 4 cut(s) 44, 204, 342, 686
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 1 cut(s) 207
MlsI TGGCCA 2 cut(s) 515, 662
MluCI AATT 7 cut(s) 36, 86, 150, 298, 815, 871, 889
MluNI TGGCCA 2 cut(s) 515, 662
MlyI GAGTC 2 cut(s) 353, 454
MmeI TCCRAC 1 cut(s) 682
Mox20I TGGCCA 2 cut(s) 515, 662
Mph1103I ATGCAT 1 cut(s) 135
MscI TGGCCA 2 cut(s) 515, 662
MseI TTAA 4 cut(s) 297, 357, 807, 818
Msp20I TGGCCA 2 cut(s) 515, 662
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 6 cut(s) 277, 383, 452, 549, 624, 651
MspR9I CCNGG 6 cut(s) 277, 407, 453, 550, 652, 671
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 2 cut(s) 407, 671
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 2 cut(s) 617, 763
NciI CCSGG 4 cut(s) 277, 453, 550, 652
NdeII GATC 6 cut(s) 82, 207, 232, 630, 828, 856
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 5 cut(s) 100, 404, 481, 604, 697
NmeAIII GCCGAG 1 cut(s) 667
NsbI TGCGCA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 135
NspV TTCGAA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PfeI GAWTC 4 cut(s) 119, 157, 244, 267
PflMI CCANNNNNTGG 2 cut(s) 108, 259
PinAI ACCGGT 1 cut(s) 382
PkrI GCNGC 5 cut(s) 282, 599, 622, 739, 839
PleI GAGTC 2 cut(s) 352, 454
PpsI GAGTC 2 cut(s) 352, 454
PpuMI RGGWCCY 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 405, 669
PspEI GGTNACC 1 cut(s) 646
PspGI CCWGG 2 cut(s) 405, 669
PspN4I GGNNCC 5 cut(s) 100, 404, 481, 604, 697
PspPI GGNCC 5 cut(s) 432, 468, 480, 495, 851
PspPPI RGGWCCY 1 cut(s) 480
PspXI VCTCGAGB 1 cut(s) 46
PstI CTGCAG 3 cut(s) 370, 573, 842
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 2 cut(s) 165, 848
RsaNI GTAC 2 cut(s) 164, 847
SaqAI TTAA 4 cut(s) 297, 357, 807, 818
SatI GCNGC 5 cut(s) 281, 598, 621, 738, 838
Sau3AI GATC 6 cut(s) 82, 207, 232, 630, 828, 856
Sau96I GGNCC 5 cut(s) 432, 468, 480, 495, 851
SchI GAGTC 2 cut(s) 353, 454
ScrFI CCNGG 6 cut(s) 277, 407, 453, 550, 652, 671
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 3 cut(s) 366, 569, 838
Sfr274I CTCGAG 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 2 cut(s) 480, 851
SlaI CTCGAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 7 cut(s) 36, 86, 150, 298, 815, 871, 889
SsiI CCGC 6 cut(s) 169, 283, 597, 600, 621, 737
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 6 cut(s) 275, 405, 451, 548, 650, 669
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 2 cut(s) 823, 851
TaqI TCGA 5 cut(s) 47, 155, 247, 390, 506
TasI AATT 7 cut(s) 36, 86, 150, 298, 815, 871, 889
TatI WGTACW 1 cut(s) 163
TauI GCSGC 3 cut(s) 600, 623, 740
TfiI GAWTC 4 cut(s) 119, 157, 244, 267
Tru1I TTAA 4 cut(s) 297, 357, 807, 818
Tru9I TTAA 4 cut(s) 297, 357, 807, 818
TscAI CASTG 3 cut(s) 453, 578, 670
TseI GCWGC 2 cut(s) 280, 837
TspDTI ATGAA 1 cut(s) 259
TspGWI ACGGA 2 cut(s) 531, 708
TspRI CASTG 3 cut(s) 453, 578, 670
Van91I CCANNNNNTGG 2 cut(s) 108, 259
VpaK11BI GGWCC 2 cut(s) 480, 851
VspI ATTAAT 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.