Rroxscaffold_3G00249900

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
43658726 .. 43668495
9770 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00249900.1

Sequence Viewer

Length: 540 bp
ATGAAGTTAGCGGTGATTATCAGCATCTTGTTGCACCTCTCGGCAAAGATGCGAGAGATTGGACGAAAGCGCACATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGATTCAACGTGACGATCAATTTAGAAATGATGAATTACCGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTATTCAAGTCTTCGATAAAAATGACAAAATTGGAGAGACAATTGAGCAAGGTCGATGCTCCCAATCTTTTGGTCAAGCATTATATCAAAGAAGCGAGACAAGGGATTGGAAGCTATGGGTATTGGATTGGAAGCGATGTCTTGGATTTCTTCGGTACCCATAGGCATTCGACGATGGGTACTAGATCTACGATTTGGGCGCTTTGTGGCGAGGTTCCCGTGAAGTCGGGAGTCCGACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.42

Weight (kDa)

9.76

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 262, 452
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 199
AfaI GTAC 2 cut(s) 454, 478
AgsI TTSAA 3 cut(s) 188, 200, 304
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 3 cut(s) 128, 328, 388
AlwI GGATC 1 cut(s) 199
Asp718I GGTACC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 72, 499
AsuHPI GGTGA 2 cut(s) 25, 143
BanI GGYRCC 2 cut(s) 262, 452
BbsI GAAGAC 2 cut(s) 95, 300
BccI CCATC 2 cut(s) 245, 466
BcoDI GTCTC 3 cut(s) 128, 328, 388
BfaI CTAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 500
BglII AGATCT 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 264, 454, 513
BmsI GCATC 3 cut(s) 33, 39, 343
BpiI GAAGAC 2 cut(s) 95, 300
Bsa29I ATCGAT 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 94
BshNI GGYRCC 2 cut(s) 262, 452
BshVI ATCGAT 1 cut(s) 194
BsmAI GTCTC 3 cut(s) 128, 328, 388
BsmI GAATGC 1 cut(s) 463
Bsp143I GATC 3 cut(s) 191, 208, 482
BspACI CCGC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 264, 454, 513
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 262, 452
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 191, 208, 482
Bst4CI ACNGT 1 cut(s) 105
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 2 cut(s) 72, 499
BstKTI GATC 3 cut(s) 194, 211, 485
BstMAI GTCTC 3 cut(s) 128, 328, 388
BstMBI GATC 3 cut(s) 191, 208, 482
BstV2I GAAGAC 2 cut(s) 95, 300
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 256
CfoI GCGC 2 cut(s) 72, 499
ClaI ATCGAT 1 cut(s) 194
Csp6I GTAC 2 cut(s) 453, 477
CviJI RGCY 1 cut(s) 411
CviKI_1 RGCY 1 cut(s) 411
CviQI GTAC 2 cut(s) 453, 477
DpnI GATC 3 cut(s) 193, 210, 484
DpnII GATC 3 cut(s) 191, 208, 482
FaiI YATR 3 cut(s) 381, 414, 459
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 71, 498
HaeII RGCGCY 1 cut(s) 500
HhaI GCGC 2 cut(s) 72, 499
Hin6I GCGC 2 cut(s) 70, 497
HinP1I GCGC 2 cut(s) 70, 497
HinfI GANTC 2 cut(s) 196, 528
HphI GGTGA 2 cut(s) 25, 143
Hpy188I TCNGA 2 cut(s) 178, 533
Hpy188III TCNNGA 1 cut(s) 525
Hpy99I CGWCG 2 cut(s) 472, 537
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 34, 125
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 2 cut(s) 70, 497
KpnI GGTACC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 191, 208, 482
LmnI GCTCC 1 cut(s) 361
LweI GCATC 3 cut(s) 33, 39, 343
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 203, 241
MalI GATC 3 cut(s) 193, 210, 484
MboI GATC 3 cut(s) 191, 208, 482
MboII GAAGA 5 cut(s) 100, 162, 300, 301, 439
MfeI CAATTG 3 cut(s) 126, 138, 338
MflI RGATCY 1 cut(s) 482
MluCI AATT 9 cut(s) 118, 126, 138, 163, 212, 227, 293, 326, 338
MlyI GAGTC 1 cut(s) 537
MnlI CCTC 5 cut(s) 47, 72, 241, 273, 502
MunI CAATTG 3 cut(s) 126, 138, 338
Mva1269I GAATGC 1 cut(s) 463
NdeII GATC 3 cut(s) 191, 208, 482
NlaIV GGNNCC 3 cut(s) 264, 454, 513
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 203
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 264, 454, 513
PsuI RGATCY 1 cut(s) 482
RsaI GTAC 2 cut(s) 454, 478
RsaNI GTAC 2 cut(s) 453, 477
Sau3AI GATC 3 cut(s) 191, 208, 482
SchI GAGTC 1 cut(s) 537
SetI ASST 5 cut(s) 39, 205, 351, 413, 513
SfaNI GCATC 3 cut(s) 33, 39, 343
Sse9I AATT 9 cut(s) 118, 126, 138, 163, 212, 227, 293, 326, 338
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 205
TaqI TCGA 4 cut(s) 194, 311, 351, 467
TasI AATT 9 cut(s) 118, 126, 138, 163, 212, 227, 293, 326, 338
TfiI GAWTC 1 cut(s) 196
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 5 cut(s) 17, 101, 161, 240, 302
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.