Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

51602856 .. 51603080

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCAAAAGAGTTTCTGGATTGTTGTTCTCCCACTGTTTCTGATTTTGTTATTTGGTGTTAGTTCAGCGTGCTCTTTTGATTCAGGATATGTCATTCGATTGAGGATTTATATTGTAACTGTTGATCTATGTTATATTATTTTTGATACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

51

Amino Acids

5.88

Weight (kDa)

5.79

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw21I	GWGCWC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	124
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	36, 121, 151
BstC8I	GCNNGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	70
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
FaiI	YATR	4 cut(s)	90, 111, 130, 135
FspEI	CC	5 cut(s)	39, 44, 45, 69, 88
HinfI	GANTC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	16, 84
HpyCH4III	ACNGT	3 cut(s)	36, 121, 151
HpyCH4V	TGCA	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	1 cut(s)	96
NdeII	GATC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	74
SgeI	CNNG	3 cut(s)	28, 81, 96
TaaI	ACNGT	3 cut(s)	36, 121, 151
TaqI	TCGA	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	39
TspRI	CASTG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.