Rh5AG290100

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
39719724 .. 39737737
18014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG290100.1

Sequence Viewer

Length: 936 bp
ATGGGTACAGTTGACATGGGAGGCAGTGAGGCACGCCGATTCGAAGCCTCTTCCATTAAACCACCTACAGAACAGAAACAACCGGTCGGCGTCTTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCCCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGAGCAACTGCAGTGGTGTTCTTCTCAGCCCGATTGCGGCGGAGCCGAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCGGAGGTTACTGGGGGCGTGGCCGGTGGCCTGGAAGAAGGTGGTGGGGAGGACGGAGCCGTCGGAGATTTTGGGGAGCTTGGCGGGGTCGTACCCATCAAAGATACACTCTCAGCACCACCATATATTGCAATGCATATCTCTCTCGGAGTCTCGGTCTCTCTATCTCAGTTTACAACTTCCGCCATTGATCGAAGATACCATATGACTTGCTGTCTGCCTGTCCCCTCCGAACAAAGGCAACTGTTTGAGTTTCTCATTGTCTGCAAAAGCATTGCTGTTCAGAAATCGTTCCTGTTTAGTATACCTCCATCTGGACATAGTCAGCCATTAAAAGTCCTCCTCTCCGTCACCGAGCTCCAGGAGTCTCGGCCTCCAGTTGCTGGTTGCTGCCTTGCCGGTGCCTGGGTTAGCGGGTTATTCACTTATTCTTCCTGTTCAATTGATCAGTTATTCGGCCGTTGGGCGGCTCGGCCATTTGAAATTGAAATTGAATCAGTCATTTTAAAGAGGAAGTTCAACCCCCATGGAGGTTGTAATACTGGATCTGCCCCTTGTTGA

Protein Analysis

311

Amino Acids

32.91

Weight (kDa)

5.67

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccB1I GGYRCC 2 cut(s) 138, 776
AccB7I CCANNNNNTGG 1 cut(s) 758
AccI GTMKAC 1 cut(s) 679
AciI CCGC 9 cut(s) 103, 333, 336, 357, 377, 459, 558, 789, 842
AclWI GGATC 2 cut(s) 250, 928
AcoI YGGCCR 4 cut(s) 249, 396, 832, 848
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 7, 468
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 816, 857, 863, 869, 895
AhdI GACNNNNNGTC 1 cut(s) 588
AjnI CCWGG 4 cut(s) 141, 405, 735, 779
AluBI AGCT 2 cut(s) 454, 733
AluI AGCT 2 cut(s) 454, 733
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 3 cut(s) 532, 538, 747
AlwI GGATC 2 cut(s) 250, 928
AlwNI CAGNNNCTG 1 cut(s) 758
ApeKI GCWGC 1 cut(s) 765
AsiGI ACCGGT 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 665
AspS9I GGNCC 4 cut(s) 168, 204, 216, 231
AsuC2I CCSGG 2 cut(s) 189, 286
AsuHPI GGTGA 2 cut(s) 383, 718
AsuII TTCGAA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 2 cut(s) 138, 776
BanII GRGCYC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 1 cut(s) 752
BccI CCATC 2 cut(s) 479, 694
BceAI ACGGC 3 cut(s) 143, 419, 819
BciT130I CCWGG 4 cut(s) 143, 407, 737, 781
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 2 cut(s) 189, 286
BcoDI GTCTC 3 cut(s) 532, 538, 747
BfmI CTRYAG 2 cut(s) 66, 305
BisI GCNGC 4 cut(s) 334, 357, 766, 843
BlsI GCNGC 4 cut(s) 335, 358, 767, 844
Bme1390I CCNGG 6 cut(s) 143, 189, 286, 407, 737, 781
Bme18I GGWCC 1 cut(s) 216
BmeRI GACNNNNNGTC 1 cut(s) 588
BmgT120I GGNCC 4 cut(s) 168, 204, 216, 231
BmiI GGNNCC 5 cut(s) 140, 217, 340, 433, 778
BmrFI CCNGG 6 cut(s) 143, 189, 286, 407, 737, 781
BmrI ACTGGG 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 719, 735
Bpu14I TTCGAA 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 189, 286
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 5 cut(s) 188, 227, 285, 780, 901
BsaWI WCCGGW 2 cut(s) 82, 118
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 516, 546
Bse118I RCCGGY 3 cut(s) 82, 398, 773
Bse1I ACTGG 3 cut(s) 391, 752, 922
Bse3DI GCAATG 2 cut(s) 513, 648
BseBI CCWGG 4 cut(s) 143, 407, 737, 781
BseDI CCNNGG 5 cut(s) 188, 227, 285, 780, 901
BseGI GGATG 2 cut(s) 99, 115
BseMI GCAATG 2 cut(s) 513, 648
BseMII CTCAG 3 cut(s) 335, 501, 557
BseNI ACTGG 3 cut(s) 391, 752, 922
BseRI GAGGAG 2 cut(s) 213, 707
BseX3I CGGCCG 1 cut(s) 832
BseXI GCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 165
Bsh1285I CGRYCG 3 cut(s) 87, 123, 835
BshNI GGYRCC 2 cut(s) 138, 776
BshTI ACCGGT 1 cut(s) 82
BsiEI CGRYCG 3 cut(s) 87, 123, 835
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 7 cut(s) 83, 119, 188, 285, 360, 399, 774
BslFI GGGAC 3 cut(s) 205, 229, 584
BsmAI GTCTC 3 cut(s) 532, 538, 747
BsmFI GGGAC 3 cut(s) 205, 229, 584
Bso31I GGTCTC 1 cut(s) 538
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 5 cut(s) 255, 366, 565, 820, 920
Bsp19I CCATGG 2 cut(s) 227, 901
BspACI CCGC 9 cut(s) 103, 333, 336, 357, 377, 459, 558, 789, 842
BspCNI CTCAG 3 cut(s) 334, 500, 556
BspLI GGNNCC 5 cut(s) 140, 217, 340, 433, 778
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 2 cut(s) 250, 928
BspT104I TTCGAA 1 cut(s) 42
BspT107I GGYRCC 2 cut(s) 138, 776
BspTNI GGTCTC 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 513, 648
BsrFI RCCGGY 3 cut(s) 82, 398, 773
BsrI ACTGG 3 cut(s) 391, 752, 922
BssAI RCCGGY 3 cut(s) 82, 398, 773
BssECI CCNNGG 5 cut(s) 188, 227, 285, 780, 901
BssMI GATC 5 cut(s) 255, 366, 565, 820, 920
BssNAI GTATAC 1 cut(s) 680
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 227, 901
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 4 cut(s) 143, 407, 737, 781
Bst4CI ACNGT 2 cut(s) 10, 621
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 34, 148
BstDEI CTNAG 3 cut(s) 321, 487, 543
BstDSI CCRYGG 2 cut(s) 227, 901
BstF5I GGATG 2 cut(s) 99, 115
BstKTI GATC 5 cut(s) 258, 369, 568, 823, 923
BstMAI GTCTC 3 cut(s) 532, 538, 747
BstMBI GATC 5 cut(s) 255, 366, 565, 820, 920
BstMCI CGRYCG 3 cut(s) 87, 123, 835
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 4 cut(s) 143, 407, 737, 781
BstSCI CCNGG 6 cut(s) 141, 187, 284, 405, 735, 779
BstSFI CTRYAG 2 cut(s) 66, 305
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 680
BstZI CGGCCG 1 cut(s) 832
BtgI CCRYGG 2 cut(s) 227, 901
BtsCI GGATG 2 cut(s) 99, 115
BtsI GCAGTG 3 cut(s) 31, 182, 314
BtsIMutI CAGTG 3 cut(s) 31, 182, 314
Cac8I GCNNGC 2 cut(s) 34, 148
CaiI CAGNNNCTG 1 cut(s) 758
Cfr10I RCCGGY 3 cut(s) 82, 398, 773
Cfr13I GGNCC 4 cut(s) 168, 204, 216, 231
CseI GACGC 2 cut(s) 79, 139
Csp6I GTAC 2 cut(s) 6, 467
CspAI ACCGGT 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 290, 325
CviAII CATG 3 cut(s) 16, 228, 902
CviQI GTAC 2 cut(s) 6, 467
DdeI CTNAG 3 cut(s) 321, 487, 543
DpnI GATC 5 cut(s) 257, 368, 567, 822, 922
DpnII GATC 5 cut(s) 255, 366, 565, 820, 920
DraI TTTAAA 1 cut(s) 882
DrdI GACNNNNNNGTC 1 cut(s) 434
DriI GACNNNNNGTC 1 cut(s) 588
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 4 cut(s) 249, 396, 832, 848
EagI CGGCCG 1 cut(s) 832
Eam1104I CTCTTC 1 cut(s) 55
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 55
EciI GGCGGA 2 cut(s) 351, 547
Ecl136II GAGCTC 1 cut(s) 733
EclXI CGGCCG 1 cut(s) 832
Eco130I CCWWGG 2 cut(s) 227, 901
Eco24I GRGCYC 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 216
Eco52I CGGCCG 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 733
EcoICRI GAGCTC 1 cut(s) 733
EcoO109I RGGNCCY 2 cut(s) 204, 216
EcoRII CCWGG 4 cut(s) 141, 405, 735, 779
EcoT14I CCWWGG 2 cut(s) 227, 901
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 2 cut(s) 227, 901
FaeI CATG 3 cut(s) 19, 231, 905
FaqI GGGAC 3 cut(s) 205, 229, 584
FatI CATG 3 cut(s) 15, 227, 901
FauI CCCGC 2 cut(s) 452, 782
FauNDI CATATG 1 cut(s) 579
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 4 cut(s) 334, 357, 766, 843
FokI GGATG 2 cut(s) 86, 102
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 4 cut(s) 334, 357, 766, 843
GluI GCNGC 4 cut(s) 334, 357, 766, 843
GsuI CTGGAG 2 cut(s) 719, 735
HapII CCGG 7 cut(s) 83, 119, 188, 285, 360, 399, 774
HgaI GACGC 2 cut(s) 79, 139
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 19, 231, 905
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 5 cut(s) 39, 196, 525, 740, 869
HpaII CCGG 7 cut(s) 83, 119, 188, 285, 360, 399, 774
HphI GGTGA 2 cut(s) 383, 718
Hpy166II GTNNAC 3 cut(s) 13, 549, 680
Hpy188I TCNGA 4 cut(s) 440, 524, 607, 660
Hpy188III TCNNGA 1 cut(s) 690
Hpy8I GTNNAC 3 cut(s) 13, 549, 680
Hpy99I CGWCG 3 cut(s) 128, 244, 440
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 2 cut(s) 10, 621
HpyCH4V TGCA 6 cut(s) 133, 182, 307, 506, 511, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 3 cut(s) 321, 487, 543
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 19, 231, 905
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 255, 366, 565, 820, 920
LmnI GCTCC 4 cut(s) 338, 431, 451, 738
Lsp1109I GCAGC 1 cut(s) 752
MaeIII GTNAC 2 cut(s) 382, 724
MalI GATC 5 cut(s) 257, 368, 567, 822, 922
MboI GATC 5 cut(s) 255, 366, 565, 820, 920
MboII GAAGA 6 cut(s) 42, 85, 309, 422, 582, 798
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 1 cut(s) 735
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 3 cut(s) 816, 858, 864
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 3 cut(s) 190, 534, 749
MmeI TCCRAC 1 cut(s) 418
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 513
MroXI GAANNNNTTC 1 cut(s) 665
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 57, 707, 881
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 7 cut(s) 83, 119, 188, 285, 360, 399, 774
MspR9I CCNGG 6 cut(s) 143, 189, 286, 407, 737, 781
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 4 cut(s) 143, 407, 737, 781
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 2 cut(s) 189, 286
NcoI CCATGG 2 cut(s) 227, 901
NdeI CATATG 1 cut(s) 579
NdeII GATC 5 cut(s) 255, 366, 565, 820, 920
NlaIII CATG 3 cut(s) 19, 231, 905
NlaIV GGNNCC 5 cut(s) 140, 217, 340, 433, 778
NmeAIII GCCGAG 2 cut(s) 724, 826
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 513
NspV TTCGAA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 2 cut(s) 39, 869
PflFI GACNNNGTC 1 cut(s) 696
PflMI CCANNNNNTGG 1 cut(s) 758
PfoI TCCNGGA 1 cut(s) 735
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 335, 358, 767, 844
PleI GAGTC 3 cut(s) 190, 533, 748
PpsI GAGTC 3 cut(s) 190, 533, 748
PpuMI RGGWCCY 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 735
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 4 cut(s) 141, 405, 735, 779
PspGI CCWGG 4 cut(s) 141, 405, 735, 779
PspN4I GGNNCC 5 cut(s) 140, 217, 340, 433, 778
PspPI GGNCC 4 cut(s) 168, 204, 216, 231
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 920
PsyI GACNNNGTC 1 cut(s) 696
RsaI GTAC 2 cut(s) 7, 468
RsaNI GTAC 2 cut(s) 6, 467
SacI GAGCTC 1 cut(s) 735
SaqAI TTAA 3 cut(s) 57, 707, 881
SatI GCNGC 4 cut(s) 334, 357, 766, 843
Sau3AI GATC 5 cut(s) 255, 366, 565, 820, 920
Sau96I GGNCC 4 cut(s) 168, 204, 216, 231
SchI GAGTC 3 cut(s) 190, 534, 749
ScrFI CCNGG 6 cut(s) 143, 189, 286, 407, 737, 781
SduI GDGCHC 1 cut(s) 735
SetI ASST 8 cut(s) 67, 221, 384, 418, 456, 685, 735, 910
SfcI CTRYAG 2 cut(s) 66, 305
SfuI TTCGAA 1 cut(s) 42
SinI GGWCC 1 cut(s) 216
Sse9I AATT 3 cut(s) 816, 858, 864
SsiI CCGC 9 cut(s) 103, 333, 336, 357, 377, 459, 558, 789, 842
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 6 cut(s) 141, 187, 284, 405, 735, 779
StyI CCWWGG 2 cut(s) 227, 901
TaaI ACNGT 2 cut(s) 10, 621
TaqI TCGA 5 cut(s) 42, 96, 126, 242, 568
TaqII GACCGA 1 cut(s) 520
TasI AATT 3 cut(s) 816, 858, 864
TauI GCSGC 3 cut(s) 336, 359, 845
TfiI GAWTC 2 cut(s) 39, 869
Tru1I TTAA 3 cut(s) 57, 707, 881
Tru9I TTAA 3 cut(s) 57, 707, 881
TscAI CASTG 3 cut(s) 31, 189, 314
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 1 cut(s) 765
Tsp45I GTSAC 1 cut(s) 724
TspGWI ACGGA 3 cut(s) 267, 444, 712
TspRI CASTG 3 cut(s) 31, 189, 314
Tth111I GACNNNGTC 1 cut(s) 696
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 665
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.