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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 284 |
| Acc36I | ACCTGC | 1 cut(s) | 284 |
| AciI | CCGC | 1 cut(s) | 202 |
| AgsI | TTSAA | 1 cut(s) | 518 |
| AluBI | AGCT | 2 cut(s) | 140, 419 |
| AluI | AGCT | 2 cut(s) | 140, 419 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 143 |
| ApeKI | GCWGC | 2 cut(s) | 140, 314 |
| AsuHPI | GGTGA | 1 cut(s) | 287 |
| BbvI | GCAGC | 2 cut(s) | 127, 301 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BfmI | CTRYAG | 3 cut(s) | 315, 441, 490 |
| BfuAI | ACCTGC | 1 cut(s) | 284 |
| BisI | GCNGC | 2 cut(s) | 141, 315 |
| BlsI | GCNGC | 2 cut(s) | 142, 316 |
| BmsI | GCATC | 2 cut(s) | 229, 251 |
| Bsa29I | ATCGAT | 1 cut(s) | 559 |
| BsaJI | CCNNGG | 1 cut(s) | 409 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseCI | ATCGAT | 1 cut(s) | 559 |
| BseDI | CCNNGG | 1 cut(s) | 409 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseXI | GCAGC | 2 cut(s) | 127, 301 |
| BshVI | ATCGAT | 1 cut(s) | 559 |
| BslFI | GGGAC | 1 cut(s) | 412 |
| BsmFI | GGGAC | 1 cut(s) | 412 |
| Bsp143I | GATC | 2 cut(s) | 160, 196 |
| BspACI | CCGC | 1 cut(s) | 202 |
| BspDI | ATCGAT | 1 cut(s) | 559 |
| BspMAI | CTGCAG | 1 cut(s) | 319 |
| BspMI | ACCTGC | 1 cut(s) | 284 |
| BspQI | GCTCTTC | 1 cut(s) | 409 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 1 cut(s) | 409 |
| BssMI | GATC | 2 cut(s) | 160, 196 |
| BssT1I | CCWWGG | 1 cut(s) | 409 |
| Bst4CI | ACNGT | 4 cut(s) | 36, 51, 254, 403 |
| Bst6I | CTCTTC | 2 cut(s) | 101, 409 |
| BstDEI | CTNAG | 1 cut(s) | 174 |
| BstKTI | GATC | 2 cut(s) | 163, 199 |
| BstMBI | GATC | 2 cut(s) | 160, 196 |
| BstSFI | CTRYAG | 3 cut(s) | 315, 441, 490 |
| BstV1I | GCAGC | 2 cut(s) | 127, 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 559 |
| BsuTUI | ATCGAT | 1 cut(s) | 559 |
| BtsIMutI | CAGTG | 2 cut(s) | 32, 259 |
| BveI | ACCTGC | 1 cut(s) | 284 |
| CaiI | CAGNNNCTG | 1 cut(s) | 143 |
| ClaI | ATCGAT | 1 cut(s) | 559 |
| CseI | GACGC | 1 cut(s) | 320 |
| CviAII | CATG | 1 cut(s) | 457 |
| CviJI | RGCY | 3 cut(s) | 140, 419, 489 |
| CviKI_1 | RGCY | 3 cut(s) | 140, 419, 489 |
| DdeI | CTNAG | 1 cut(s) | 174 |
| DpnI | GATC | 2 cut(s) | 162, 198 |
| DpnII | GATC | 2 cut(s) | 160, 196 |
| Eam1104I | CTCTTC | 2 cut(s) | 101, 409 |
| EarI | CTCTTC | 2 cut(s) | 101, 409 |
| Eco130I | CCWWGG | 1 cut(s) | 409 |
| EcoT14I | CCWWGG | 1 cut(s) | 409 |
| EcoT22I | ATGCAT | 1 cut(s) | 244 |
| ErhI | CCWWGG | 1 cut(s) | 409 |
| FaeI | CATG | 1 cut(s) | 460 |
| FaiI | YATR | 7 cut(s) | 89, 387, 434, 458, 509, 524, 534 |
| FaqI | GGGAC | 1 cut(s) | 412 |
| FatI | CATG | 1 cut(s) | 456 |
| FauI | CCCGC | 1 cut(s) | 195 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 315 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 315 |
| GluI | GCNGC | 2 cut(s) | 141, 315 |
| HgaI | GACGC | 1 cut(s) | 320 |
| Hin1II | CATG | 1 cut(s) | 460 |
| HincII | GTYRAC | 2 cut(s) | 224, 406 |
| HindII | GTYRAC | 2 cut(s) | 224, 406 |
| HinfI | GANTC | 3 cut(s) | 422, 504, 556 |
| HphI | GGTGA | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 3 cut(s) | 183, 224, 406 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 130, 247 |
| Hpy8I | GTNNAC | 3 cut(s) | 183, 224, 406 |
| HpyCH4III | ACNGT | 4 cut(s) | 36, 51, 254, 403 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 242, 293, 317 |
| HpyF3I | CTNAG | 1 cut(s) | 174 |
| Hsp92II | CATG | 1 cut(s) | 460 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 2 cut(s) | 160, 196 |
| LguI | GCTCTTC | 1 cut(s) | 409 |
| LpnPI | CCDG | 2 cut(s) | 240, 279 |
| Lsp1109I | GCAGC | 2 cut(s) | 127, 301 |
| LweI | GCATC | 2 cut(s) | 229, 251 |
| MaeIII | GTNAC | 1 cut(s) | 360 |
| MalI | GATC | 2 cut(s) | 162, 198 |
| MboI | GATC | 2 cut(s) | 160, 196 |
| MboII | GAAGA | 3 cut(s) | 118, 357, 426 |
| MfeI | CAATTG | 1 cut(s) | 427 |
| MluCI | AATT | 5 cut(s) | 382, 390, 427, 529, 568 |
| MmeI | TCCRAC | 1 cut(s) | 190 |
| MnlI | CCTC | 3 cut(s) | 104, 171, 389 |
| Mph1103I | ATGCAT | 1 cut(s) | 244 |
| MseI | TTAA | 3 cut(s) | 528, 567, 571 |
| MspA1I | CMGCKG | 2 cut(s) | 140, 202 |
| MunI | CAATTG | 1 cut(s) | 427 |
| NdeII | GATC | 2 cut(s) | 160, 196 |
| NlaIII | CATG | 1 cut(s) | 460 |
| NsiI | ATGCAT | 1 cut(s) | 244 |
| PacI | TTAATTAA | 1 cut(s) | 571 |
| PaqCI | CACCTGC | 1 cut(s) | 284 |
| PciSI | GCTCTTC | 1 cut(s) | 409 |
| PfeI | GAWTC | 3 cut(s) | 422, 504, 556 |
| PkrI | GCNGC | 2 cut(s) | 142, 316 |
| PstI | CTGCAG | 1 cut(s) | 319 |
| PstNI | CAGNNNCTG | 1 cut(s) | 143 |
| PvuII | CAGCTG | 1 cut(s) | 140 |
| SapI | GCTCTTC | 1 cut(s) | 409 |
| SaqAI | TTAA | 3 cut(s) | 528, 567, 571 |
| SatI | GCNGC | 2 cut(s) | 141, 315 |
| Sau3AI | GATC | 2 cut(s) | 160, 196 |
| SetI | ASST | 8 cut(s) | 14, 142, 173, 182, 229, 298, 421, 539 |
| SfaNI | GCATC | 2 cut(s) | 229, 251 |
| SfcI | CTRYAG | 3 cut(s) | 315, 441, 490 |
| SgeI | CNNG | 9 cut(s) | 176, 215, 231, 239, 306, 339, 349, 422, 469 |
| Sse9I | AATT | 5 cut(s) | 382, 390, 427, 529, 568 |
| SsiI | CCGC | 1 cut(s) | 202 |
| StyI | CCWWGG | 1 cut(s) | 409 |
| TaaI | ACNGT | 4 cut(s) | 36, 51, 254, 403 |
| TaqI | TCGA | 1 cut(s) | 559 |
| TasI | AATT | 5 cut(s) | 382, 390, 427, 529, 568 |
| TfiI | GAWTC | 3 cut(s) | 422, 504, 556 |
| Tru1I | TTAA | 3 cut(s) | 528, 567, 571 |
| Tru9I | TTAA | 3 cut(s) | 528, 567, 571 |
| TscAI | CASTG | 2 cut(s) | 39, 259 |
| TseI | GCWGC | 2 cut(s) | 140, 314 |
| TspDTI | ATGAA | 7 cut(s) | 131, 276, 294, 365, 402, 473, 496 |
| TspRI | CASTG | 2 cut(s) | 39, 259 |
| Zsp2I | ATGCAT | 1 cut(s) | 244 |