AT1G10110

calcium-transporting ATPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000658
Physical Location & Seq
Forward (+)
3302564 .. 3303938
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10110.1

Sequence Viewer

Length: 1200 bp
ATGGCAACAGATGATGATGGTACTCCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTGGTTTTCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTTGCTTCCAAATCATCCTCACCTAGAAAAAATCATACTCCGTGGTTGATTCTCTACCAAGACACGCACTGGCTCATGTTTAATTCCGATGAAGAAAAGTTTTACAGAACAGTATACCTAGGTCGCTTTGCCGAGTGTCGTGGCGTGGCGTCTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAAATCAATTTCTACATCATTAATCCCTTCACGCCACAGCTCATTCGTCTCCCACCTCTTGAATATTCAAACACCGGCACAAAGTTCGAGCGACCCGGTAACTATGTATTCCACCTACTCTTCGACGATCGCCACAGAACAAGCCGTGCAATAGTGGGGAATTCGGTTTTGTGGGTAGACGAAAAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATTTGTTCCGAGTCCCTACATATATTATTGCAGTAAAAGAGGGCAAGAGTGGTTTGAGATTCCGGCAAGCACTTGTGGGAAGCTATTCCGGTGTTTGGATATGGCCTACAAAGACGAAAAGCTTTACATACTTACTTCCAATGGTAGCATAAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAAATCGACAATCATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCATAAGATGGGAATGAGACTAACCACGTCTGGGGATGTTGTGATGATCCAATGCGTGACAACAGGCACTCACAAAAGAAGCCCGTTCCGAATCTTCAAGTTGAGTAGCATTACAGAGACGAAGGAGTCTTCTCACGAGGTGGTAGGGTGGGAGACAGTGCATTCTTTCGAGGACGAGGAGTCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTATCCGGAATCAAGAAAGATTCCATATATTACTGTCACACTTCTCTATCATCATCTATTCGGGAAACATGTGCTTATGAGATTCCTACGCACAAGATCACTGCATATGACATTCCTAAGCAGGATATCAAACCTATTCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCGTTCCTTGTTTCGGTGCTGGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase LRR_8

Protein Analysis

399

Amino Acids

46.11

Weight (kDa)

6.92

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 51 1.9e-06 F-box domain
Beta-prop_KIB1-4 PF03478 69 - 369 4.3e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 898
AccI GTMKAC 2 cut(s) 240, 486
AccII CGCG 1 cut(s) 1143
AccIII TCCGGA 1 cut(s) 1001
AciI CCGC 2 cut(s) 1141, 1143
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 913
AfaI GTAC 3 cut(s) 22, 125, 524
AfiI CCNNNNNNNGG 4 cut(s) 628, 804, 992, 1184
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 4 cut(s) 70, 371, 378, 871
AhdI GACNNNNNGTC 1 cut(s) 952
AjiI CACGTC 1 cut(s) 801
AluBI AGCT 6 cut(s) 40, 81, 101, 349, 616, 655
AluI AGCT 6 cut(s) 40, 81, 101, 349, 616, 655
Alw26I GTCTC 5 cut(s) 362, 702, 784, 884, 920
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 96
Aor13HI TCCGGA 1 cut(s) 1001
AoxI GGCC 1 cut(s) 636
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 617
AspA2I CCTAGG 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 96
AvrII CCTAGG 1 cut(s) 244
BauI CACGAG 1 cut(s) 908
BbsI GAAGAC 1 cut(s) 894
BccI CCATC 3 cut(s) 11, 753, 775
BceAI ACGGC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciVI GTATCC 1 cut(s) 1009
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 5 cut(s) 362, 702, 784, 884, 920
BfaI CTAG 3 cut(s) 150, 245, 717
BfuI GTATCC 1 cut(s) 1009
BisI GCNGC 1 cut(s) 1144
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 1 cut(s) 1145
Bme1390I CCNGG 1 cut(s) 405
BmeRI GACNNNNNGTC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 801
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 1155
BpiI GAAGAC 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 167, 244, 1141
BsaWI WCCGGW 2 cut(s) 621, 1001
Bsc4I CCNNNNNNNGG 4 cut(s) 628, 804, 992, 1184
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 1001
BseDI CCNNGG 3 cut(s) 167, 244, 1141
BseGI GGATG 3 cut(s) 140, 733, 814
BseLI CCNNNNNNNGG 4 cut(s) 628, 804, 992, 1184
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 1143
Bsh1285I CGRYCG 2 cut(s) 439, 752
BshFI GGCC 1 cut(s) 638
BsiEI CGRYCG 2 cut(s) 439, 752
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 5 cut(s) 384, 405, 596, 622, 1002
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 4 cut(s) 628, 804, 992, 1184
BsmAI GTCTC 5 cut(s) 362, 702, 784, 884, 920
BsmBI CGTCTC 2 cut(s) 362, 884
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 1001
Bsp143I GATC 3 cut(s) 436, 819, 1092
BspACI CCGC 2 cut(s) 1141, 1143
BspANI GGCC 1 cut(s) 638
BspEI TCCGGA 1 cut(s) 1001
BspFNI CGCG 1 cut(s) 1143
BspPI GGATC 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 167, 244, 1141
BssMI GATC 3 cut(s) 436, 819, 1092
BssNAI GTATAC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 908
Bst4CI ACNGT 5 cut(s) 109, 238, 753, 931, 1031
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 3 cut(s) 102, 508, 1113
BstDSI CCRYGG 2 cut(s) 167, 1141
BstF5I GGATG 3 cut(s) 140, 733, 814
BstFNI CGCG 1 cut(s) 1143
BstKTI GATC 3 cut(s) 439, 822, 1095
BstMAI GTCTC 5 cut(s) 362, 702, 784, 884, 920
BstMBI GATC 3 cut(s) 436, 819, 1092
BstMCI CGRYCG 2 cut(s) 439, 752
BstNSI RCATGY 1 cut(s) 1068
BstSCI CCNGG 1 cut(s) 403
BstUI CGCG 1 cut(s) 1143
BstV2I GAAGAC 1 cut(s) 894
BstZ17I GTATAC 1 cut(s) 241
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 1 cut(s) 638
BtgI CCRYGG 2 cut(s) 167, 1141
BtrI CACGTC 1 cut(s) 801
BtsCI GGATG 3 cut(s) 140, 733, 814
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 3 cut(s) 193, 936, 1095
Cac8I GCNNGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 383
Cfr42I CCGCGG 1 cut(s) 1144
CseI GACGC 2 cut(s) 264, 964
Csp6I GTAC 3 cut(s) 21, 124, 523
CviAII CATG 2 cut(s) 202, 1065
CviQI GTAC 3 cut(s) 21, 124, 523
DdeI CTNAG 3 cut(s) 102, 508, 1113
DpnI GATC 3 cut(s) 438, 821, 1094
DpnII GATC 3 cut(s) 436, 819, 1092
DraIII CACNNNGTG 1 cut(s) 913
DrdI GACNNNNNNGTC 1 cut(s) 898
DriI GACNNNNNGTC 1 cut(s) 952
DseDI GACNNNNNNGTC 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 434
Eam1105I GACNNNNNGTC 1 cut(s) 952
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 244
Eco32I GATATC 1 cut(s) 1123
Eco88I CYCGRG 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 469
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 2 cut(s) 362, 884
FaeI CATG 2 cut(s) 205, 1068
FaqI GGGAC 1 cut(s) 531
FatI CATG 2 cut(s) 201, 1064
FauNDI CATATG 1 cut(s) 1102
FblI GTMKAC 2 cut(s) 240, 486
Fnu4HI GCNGC 1 cut(s) 1144
FokI GGATG 3 cut(s) 127, 720, 821
Fsp4HI GCNGC 1 cut(s) 1144
FspBI CTAG 3 cut(s) 150, 245, 717
GluI GCNGC 1 cut(s) 1144
HaeIII GGCC 1 cut(s) 638
HapII CCGG 5 cut(s) 384, 405, 596, 622, 1002
HgaI GACGC 2 cut(s) 264, 964
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 2 cut(s) 205, 1068
HindIII AAGCTT 1 cut(s) 653
HpaII CCGG 5 cut(s) 384, 405, 596, 622, 1002
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 241, 487
Hpy188I TCNGA 5 cut(s) 27, 37, 214, 543, 863
Hpy188III TCNNGA 6 cut(s) 368, 908, 1002, 1009, 1058, 1150
Hpy8I GTNNAC 2 cut(s) 241, 487
Hpy99I CGWCG 2 cut(s) 121, 437
HpyAV CCTTC 2 cut(s) 346, 889
HpyCH4III ACNGT 5 cut(s) 109, 238, 753, 931, 1031
HpyCH4IV ACGT 1 cut(s) 800
HpyCH4V TGCA 4 cut(s) 458, 564, 934, 1100
HpyF3I CTNAG 3 cut(s) 102, 508, 1113
HpySE526I ACGT 1 cut(s) 800
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 2 cut(s) 205, 1068
Kpn2I TCCGGA 1 cut(s) 1001
KspI CCGCGG 1 cut(s) 1144
Kzo9I GATC 3 cut(s) 436, 819, 1092
LmnI GCTCC 1 cut(s) 37
LweI GCATC 1 cut(s) 1155
MaeI CTAG 3 cut(s) 150, 245, 717
MaeII ACGT 1 cut(s) 800
MaeIII GTNAC 6 cut(s) 43, 407, 757, 829, 976, 1031
MalI GATC 3 cut(s) 438, 821, 1094
MboI GATC 3 cut(s) 436, 819, 1092
MboII GAAGA 4 cut(s) 230, 421, 859, 894
MluCI AATT 4 cut(s) 28, 208, 316, 469
MlyI GAGTC 3 cut(s) 553, 908, 962
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 8 cut(s) 154, 375, 523, 566, 904, 937, 943, 1153
MroI TCCGGA 1 cut(s) 1001
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 2 cut(s) 207, 330
MspA1I CMGCKG 1 cut(s) 1143
MspI CCGG 5 cut(s) 384, 405, 596, 622, 1002
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 934
MvnI CGCG 1 cut(s) 1143
NciI CCSGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 1102
NdeII GATC 3 cut(s) 436, 819, 1092
NlaIII CATG 2 cut(s) 205, 1068
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 4 cut(s) 43, 829, 976, 1031
NspI RCATGY 1 cut(s) 1068
PaeR7I CTCGAG 1 cut(s) 96
PciI ACATGT 1 cut(s) 1064
PctI GAATGC 1 cut(s) 934
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 7 cut(s) 175, 592, 687, 864, 1005, 1016, 1078
PkrI GCNGC 1 cut(s) 1145
Ple19I CGATCG 1 cut(s) 439
PleI GAGTC 3 cut(s) 552, 907, 961
PpsI GAGTC 3 cut(s) 552, 907, 961
PscI ACATGT 1 cut(s) 1064
PshBI ATTAAT 1 cut(s) 330
PspXI VCTCGAGB 1 cut(s) 96
PvuI CGATCG 1 cut(s) 439
RsaI GTAC 3 cut(s) 22, 125, 524
RsaNI GTAC 3 cut(s) 21, 124, 523
SacII CCGCGG 1 cut(s) 1144
SaqAI TTAA 2 cut(s) 207, 330
SatI GCNGC 1 cut(s) 1144
Sau3AI GATC 3 cut(s) 436, 819, 1092
SchI GAGTC 3 cut(s) 553, 908, 962
ScrFI CCNGG 1 cut(s) 405
SfaNI GCATC 1 cut(s) 1155
Sfr274I CTCGAG 1 cut(s) 96
Sfr303I CCGCGG 1 cut(s) 1144
SgrBI CCGCGG 1 cut(s) 1144
SlaI CTCGAG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 76, 96
SmoI CTYRAG 2 cut(s) 76, 96
Sse9I AATT 4 cut(s) 28, 208, 316, 469
SsiI CCGC 2 cut(s) 1141, 1143
SspI AATATT 1 cut(s) 374
SspMI CTAG 3 cut(s) 150, 245, 717
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 5 cut(s) 109, 238, 753, 931, 1031
TaiI ACGT 1 cut(s) 803
TaqI TCGA 7 cut(s) 97, 396, 432, 726, 748, 942, 1135
TasI AATT 4 cut(s) 28, 208, 316, 469
TauI GCSGC 1 cut(s) 1146
TfiI GAWTC 7 cut(s) 175, 592, 687, 864, 1005, 1016, 1078
Tru1I TTAA 2 cut(s) 207, 330
Tru9I TTAA 2 cut(s) 207, 330
TscAI CASTG 3 cut(s) 200, 936, 1102
TseFI GTSAC 4 cut(s) 43, 829, 976, 1031
Tsp45I GTSAC 4 cut(s) 43, 829, 976, 1031
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 200, 936, 1102
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 1068
XhoI CTCGAG 1 cut(s) 96
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 240, 486
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 3 cut(s) 150, 245, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.