Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

1761636 .. 1762628

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACCGAAGACATCGACGAGATTCAAGCAGCCTTCAAGCGCCTCATGTCCAGCATCCTCGGTGGTAATAGGCATGAAAACCTGACTGAAGATATCATCCCTGTGGCGGAGACGACGATTGAGGAACTGACCAAGATACATGACCGCATTGTTGAGCTAAATAAAAATATGAGGAAGGAGTACTGTCGCACCATCGGCACCAAAAGGAGGTGGTCTGGGCTTCCAACTGATCTTCTAGAGTTGATATTGAGAAAGCTTATACCTTCTGAGTTTGACAGCCTTCATTTTAAAGAGATCCTTCGCTTTAAAGCCGTTTGTCATTCTTGGAGAACCGCTGCAAAATCTTGCAACTCTTATCAGTCTTATGCTCCATTGCCTAAAACTCCATGGCACTTGCTTCACAGCAATAACATGTCCTACCTCTTCGATCCTGCAGAAAACAAAGTTTACAAAATTAGGAGCGTCTACGACAGCTTTCCTAATGCTAGGAAGTCACTTAAAGTCTGGGACTTTGGGGAATCCATTCCAAAAATGGTCAATGATCTTAAATCAAATAATTTCCCTGTGATTATAACCATTTGCTGGCATCATGGATGGGGGAGATTTTACGTGTGGGAAAAAGTGAGCGGCATATGTATTCCAAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

217

Amino Acids

25.29

Weight (kDa)

8.9

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccBSI	CCGCTC	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	4 cut(s)	107, 145, 333, 627
AclWI	GGATC	2 cut(s)	289, 422
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	106, 207, 582
AflIII	ACRYGT	2 cut(s)	411, 609
AgsI	TTSAA	2 cut(s)	26, 37
AluBI	AGCT	3 cut(s)	157, 256, 474
AluI	AGCT	3 cut(s)	157, 256, 474
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	289, 422
ApeKI	GCWGC	2 cut(s)	29, 335
ApoI	RAATTY	1 cut(s)	643
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	41, 322
BccI	CCATC	2 cut(s)	200, 588
BceAI	ACGGC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	236, 486
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	43
BisI	GCNGC	3 cut(s)	30, 336, 628
BlsI	GCNGC	3 cut(s)	31, 337, 629
BmcAI	AGTACT	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	2 cut(s)	63, 595
BpiI	GAAGAC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	58, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 207, 582
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	58, 386
BseGI	GGATG	3 cut(s)	54, 96, 599
BseLI	CCNNNNNNNGG	3 cut(s)	106, 207, 582
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	41, 322
BshNI	GGYRCC	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	106, 207, 582
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	229, 294, 427, 541
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	4 cut(s)	107, 145, 333, 627
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	289, 422
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	58, 386
BssMI	GATC	4 cut(s)	229, 294, 427, 541
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	54, 96, 599
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	232, 297, 430, 544
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	229, 294, 427, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	41, 322
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	54, 96, 599
Cac8I	GCNNGC	1 cut(s)	584
CfoI	GCGC	1 cut(s)	42
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	46, 74, 140, 387, 412, 590
CviJI	RGCY	7 cut(s)	32, 157, 220, 256, 279, 311, 474
CviKI_1	RGCY	7 cut(s)	32, 157, 220, 256, 279, 311, 474
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	4 cut(s)	231, 296, 429, 543
DpnII	GATC	4 cut(s)	229, 294, 427, 541
DraI	TTTAAA	2 cut(s)	289, 307
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	6 cut(s)	49, 77, 143, 390, 415, 593
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	6 cut(s)	45, 73, 139, 386, 411, 589
FauNDI	CATATG	1 cut(s)	632
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	3 cut(s)	30, 336, 628
FokI	GGATG	3 cut(s)	41, 83, 606
Fsp4HI	GCNGC	3 cut(s)	30, 336, 628
FspBI	CTAG	2 cut(s)	236, 486
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	30, 336, 628
HaeII	RGCGCY	1 cut(s)	43
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	49, 77, 143, 390, 415, 593
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	22, 518
Hpy166II	GTNNAC	2 cut(s)	448, 466
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	448, 466
Hpy99I	CGWCG	2 cut(s)	20, 118
HpyAV	CCTTC	5 cut(s)	43, 169, 273, 290, 308
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	338, 348, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	6 cut(s)	49, 77, 143, 390, 415, 593
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	229, 294, 427, 541
LmnI	GCTCC	2 cut(s)	373, 459
LpnPI	CCDG	8 cut(s)	64, 95, 114, 201, 444, 490, 568, 576
Lsp1109I	GCAGC	2 cut(s)	41, 322
LweI	GCATC	2 cut(s)	63, 595
MaeI	CTAG	2 cut(s)	236, 486
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	4 cut(s)	231, 296, 429, 543
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	4 cut(s)	229, 294, 427, 541
MboII	GAAGA	4 cut(s)	20, 101, 224, 415
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	3 cut(s)	453, 556, 643
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	53, 68, 115, 165, 201, 431
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	4 cut(s)	288, 306, 498, 546
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	386
NdeI	CATATG	1 cut(s)	632
NdeII	GATC	4 cut(s)	229, 294, 427, 541
NlaIII	CATG	6 cut(s)	49, 77, 143, 390, 415, 593
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	492
NspI	RCATGY	1 cut(s)	415
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	22, 518
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	31, 337, 629
Ppu21I	YACGTR	1 cut(s)	610
PscI	ACATGT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	288, 306, 498, 546
SatI	GCNGC	3 cut(s)	30, 336, 628
Sau3AI	GATC	4 cut(s)	229, 294, 427, 541
ScaI	AGTACT	1 cut(s)	182
SetI	ASST	8 cut(s)	84, 159, 212, 258, 265, 423, 476, 612
SfaNI	GCATC	2 cut(s)	63, 595
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	453, 556, 643
SsiI	CCGC	4 cut(s)	107, 145, 333, 627
SspMI	CTAG	2 cut(s)	236, 486
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	15, 426
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	453, 556, 643
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	22, 518
Tru1I	TTAA	4 cut(s)	288, 306, 498, 546
Tru9I	TTAA	4 cut(s)	288, 306, 498, 546
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	2 cut(s)	29, 335
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	90, 272
Van91I	CCANNNNNTGG	1 cut(s)	582
XapI	RAATTY	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	236, 486
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.