Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

15690034 .. 15691014

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23804.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTTGATAGGTCGACTGAAGCTAGCGTCGACGAAGATCGTAAGACTCACATCATGCAGCGCCTCATGTCCGGTCTAGATGGCCTCATGTTCGCCGTAGATGGTGAAAGTACGCCTGAAGATGAGATAAGTTTGACTGATGAGATTGAGTACTTTAACAAGATCCACGACAAGAATGTTGATCTGAAACAAAAAATTGTTGTTGAGCTGAAACAAAAGAACGTCCATGACTACTGTCCTGATGCCATATGTGTTGGTTCATCATATGGGTGGATTGTCATGTTTTACCGAGAAGATAATTCGGAAGACTGGAAAGCACATCTCTTCAACCCGATTACAAGAGCTAGCATTCCAATCCCAAGCACTCATACCCTTCCTGAACATTGTCATCCTCGCACACCTTCTAGAGCTATTATTTCATTCAATCCCTCTTTCAACAAGAACTTTGTTGTGGTAGTGAAATTCGGAGTTGGACTAGCATGCTATAAACATGGAGATGAAGAAAAGTCCTGGAAGATACTAATTGTTAAAGGTGCGGATTATTATGATGATAAGGGATTCGTGTTTCATGATGATCTTTTGGTGGCATCGTTCGAGACGCTTACCAATGTTTGGGACTTCAAGGAATACCCTTCTTTACTTTGTAACCCTGTACAGTCTTTATCTGATGCAAAGCCTTTTACCTATTTGATGGAGTCGTCAATTCGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

238

Amino Acids

27.24

Weight (kDa)

5.24

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	76 - 215	5.4e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccI	GTMKAC	2 cut(s)	14, 30
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	2 cut(s)	39, 138
AfaI	GTAC	3 cut(s)	112, 152, 654
AfiI	CCNNNNNNNGG	1 cut(s)	612
AgsI	TTSAA	4 cut(s)	328, 424, 436, 622
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	4 cut(s)	23, 208, 344, 410
AluI	AGCT	4 cut(s)	23, 208, 344, 410
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	116
AsuNHI	GCTAGC	2 cut(s)	23, 344
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	74, 95, 685
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	5 cut(s)	24, 77, 345, 405, 476
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	3 cut(s)	232, 596, 658
BmtI	GCTAGC	2 cut(s)	27, 348
BoxI	GACNNNNGTC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	4 cut(s)	37, 162, 181, 574
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	568
BspOI	GCTAGC	2 cut(s)	27, 348
BspPI	GGATC	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	37, 162, 181, 574
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	236, 657
Bst6I	CTCTTC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	652
BstC8I	GCNNGC	3 cut(s)	25, 346, 481
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	4 cut(s)	40, 165, 184, 577
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	4 cut(s)	37, 162, 181, 574
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	483
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	509
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	25, 346, 481
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	63
CseI	GACGC	2 cut(s)	16, 607
Csp6I	GTAC	3 cut(s)	111, 151, 653
CviAII	CATG	8 cut(s)	55, 67, 88, 227, 280, 480, 491, 569
CviJI	RGCY	6 cut(s)	23, 84, 208, 344, 410, 676
CviKI_1	RGCY	6 cut(s)	23, 84, 208, 344, 410, 676
CviQI	GTAC	3 cut(s)	111, 151, 653
DpnI	GATC	4 cut(s)	39, 164, 183, 576
DpnII	GATC	4 cut(s)	37, 162, 181, 574
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	39, 138
EcoRII	CCWGG	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	8 cut(s)	58, 70, 91, 230, 283, 483, 494, 572
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	8 cut(s)	54, 66, 87, 226, 279, 479, 490, 568
FauNDI	CATATG	2 cut(s)	248, 265
FblI	GTMKAC	2 cut(s)	14, 30
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	5 cut(s)	24, 77, 345, 405, 476
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	2 cut(s)	16, 607
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	8 cut(s)	58, 70, 91, 230, 283, 483, 494, 572
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	2 cut(s)	15, 31
HindII	GTYRAC	2 cut(s)	15, 31
HinfI	GANTC	3 cut(s)	46, 558, 695
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	15, 31
Hpy188I	TCNGA	4 cut(s)	186, 304, 467, 667
Hpy188III	TCNNGA	6 cut(s)	77, 239, 377, 405, 569, 595
Hpy8I	GTNNAC	2 cut(s)	15, 31
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyAV	CCTTC	3 cut(s)	383, 411, 642
HpyCH4III	ACNGT	2 cut(s)	236, 657
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	58, 671
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	8 cut(s)	58, 70, 91, 230, 283, 483, 494, 572
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	37, 162, 181, 574
LpnPI	CCDG	8 cut(s)	85, 129, 252, 295, 390, 496, 523, 663
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	3 cut(s)	232, 596, 658
MaeI	CTAG	5 cut(s)	24, 77, 345, 405, 476
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	4 cut(s)	39, 164, 183, 576
MboI	GATC	4 cut(s)	37, 162, 181, 574
MboII	GAAGA	7 cut(s)	47, 131, 305, 316, 317, 512, 526
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	5 cut(s)	195, 298, 461, 522, 702
MlyI	GAGTC	2 cut(s)	40, 704
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	74, 95, 402, 439
MseI	TTAA	2 cut(s)	156, 528
MslI	CAYNNNNRTG	2 cut(s)	268, 495
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	511
NdeI	CATATG	2 cut(s)	248, 265
NdeII	GATC	4 cut(s)	37, 162, 181, 574
NheI	GCTAGC	2 cut(s)	23, 344
NlaIII	CATG	8 cut(s)	58, 70, 91, 230, 283, 483, 494, 572
NspI	RCATGY	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	483
PagI	TCATGA	1 cut(s)	568
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	558
PflMI	CCANNNNNTGG	1 cut(s)	612
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	2 cut(s)	40, 703
PpsI	GAGTC	2 cut(s)	40, 703
PshAI	GACNNNNGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	3 cut(s)	112, 152, 654
RsaNI	GTAC	3 cut(s)	111, 151, 653
RseI	CAYNNNNRTG	2 cut(s)	268, 495
SalI	GTCGAC	2 cut(s)	13, 29
SaqAI	TTAA	2 cut(s)	156, 528
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	37, 162, 181, 574
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	2 cut(s)	40, 704
ScrFI	CCNGG	1 cut(s)	511
SetI	ASST	9 cut(s)	14, 25, 210, 225, 346, 403, 412, 535, 686
SfaNI	GCATC	3 cut(s)	232, 596, 658
SgrDI	CGTCGACG	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	268, 495
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	5 cut(s)	195, 298, 461, 522, 702
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	5 cut(s)	24, 77, 345, 405, 476
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	236, 657
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	14, 30, 594
TasI	AATT	5 cut(s)	195, 298, 461, 522, 702
TatI	WGTACW	2 cut(s)	150, 652
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	2 cut(s)	156, 528
Tru9I	TTAA	2 cut(s)	156, 528
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	249, 408, 513, 557
Van91I	CCANNNNNTGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	2 cut(s)	76, 404
XceI	RCATGY	1 cut(s)	483
XmiI	GTMKAC	2 cut(s)	14, 30
XspI	CTAG	5 cut(s)	24, 77, 345, 405, 476
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.