Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

6648009 .. 6648909

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTTTTCCAGAAGATGGTTGTGTGCTATACAATCCAGAAGAAGATAATAGAGTTTACAATACAAAGAGAGACTTTTCAAAGACTCGTTTCCTAGCAAACTCAGGTAACTTGTTCCTCACGGTAGATGTTGAATCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGAGAATCAATCTCCCACCTTTAGACTCAGTGGAAGGCCTTTTTACTCTTAAGCGAATAGGAGATAAGGATTTCGAAGAGAAATTTACTAGACCTAGCTTTGGTTACAGAAACCAGAATGTGGTTAATTTGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACACTGTTGTGTGGTTTTTCGATACAGAGAGTTACGAGGCATACAATGAATTTGTAGCCAACACTGATCTATTACCACCACGTTACCTAGCTTCTCATTCGAGTAGTGATGATAAGATGTATTCTAGCCATAGAAATATTGTTGTTACAACATCAGGAGAGGTTTTGTTAGTCGAGAGCATCGTTTGTGAGTCTAGAATCGGCTTCCGCCTCTATAAGAAGGTTCCTAATCCAAATCCGGATGAGCTTTTATACACACCGTATGTGTCTGTTGAGGTATATTCTTTAGGCGATGAGGCCTTTCGTTTGGATTTAGGTATCATTGTGCCTGCTGACCATCCCCTTGGTATCGAACCATCTATTTCACCCGTTACGACCGTGTCTATAACTGTGAAAAGGATTTTTCATGTCGGGTCCGACACATCTGTGTGTTCAATCTTGAAACAAAGAAAATCACACGCTTCCCAAGTCTCTCGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

273

Amino Acids

31.19

Weight (kDa)

5.02

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	11 - 125	3.9e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	17, 289
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	251, 389
AfiI	CCNNNNNNNGG	3 cut(s)	17, 269, 289
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	81, 134, 774, 781
AleI	CACNNNNGTG	2 cut(s)	347, 764
AluBI	AGCT	3 cut(s)	267, 431, 586
AluI	AGCT	3 cut(s)	267, 431, 586
Alw26I	GTCTC	2 cut(s)	66, 814
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	2 cut(s)	205, 636
ApoI	RAATTY	2 cut(s)	251, 389
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	696
AsuII	TTCGAA	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	753
BccI	CCATC	3 cut(s)	11, 684, 703
BcoDI	GTCTC	2 cut(s)	66, 814
BfaI	CTAG	6 cut(s)	95, 258, 264, 428, 465, 534
BfrI	CTTAAG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	564, 754
BmsI	GCATC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	682
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 269, 289
BseAI	TCCGGA	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	2 cut(s)	586, 676
BseLI	CCNNNNNNNGG	3 cut(s)	17, 269, 289
BseMII	CTCAG	2 cut(s)	117, 210
BseRI	GAGGAG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	207, 638
BsiEI	CGRYCG	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	17, 269, 289
BsmAI	GTCTC	2 cut(s)	66, 814
BsnI	GGCC	2 cut(s)	207, 638
Bsp119I	TTCGAA	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	547
BspANI	GGCC	2 cut(s)	207, 638
BspCNI	CTCAG	2 cut(s)	116, 209
BspEI	TCCGGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	564, 754
BspT104I	TTCGAA	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	124, 346, 600, 718, 730
Bst6I	CTCTTC	2 cut(s)	164, 240
BstAFI	CTTAAG	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	2 cut(s)	103, 196
BstF5I	GGATG	2 cut(s)	586, 676
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	66, 814
BstMBI	GATC	1 cut(s)	406
BstMCI	CGRYCG	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	207, 638
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	586, 676
BtsIMutI	CAGTG	3 cut(s)	204, 342, 402
Cac8I	GCNNGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	753
CviAII	CATG	1 cut(s)	746
CviJI	RGCY	8 cut(s)	207, 267, 398, 431, 468, 543, 586, 638
CviKI_1	RGCY	8 cut(s)	207, 267, 398, 431, 468, 543, 586, 638
DdeI	CTNAG	2 cut(s)	103, 196
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	164, 240
EarI	CTCTTC	2 cut(s)	164, 240
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	682
Eco147I	AGGCCT	2 cut(s)	207, 638
Eco47I	GGWCC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	1 cut(s)	749
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	1 cut(s)	745
FokI	GGATG	2 cut(s)	593, 663
FspBI	CTAG	6 cut(s)	95, 258, 264, 428, 465, 534
HaeIII	GGCC	2 cut(s)	207, 638
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	1 cut(s)	749
HinfI	GANTC	6 cut(s)	85, 134, 174, 194, 530, 537
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	1 cut(s)	696
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	757
Hpy188III	TCNNGA	7 cut(s)	11, 38, 495, 514, 534, 578, 778
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	197, 553
HpyCH4III	ACNGT	5 cut(s)	124, 346, 600, 718, 730
HpyCH4IV	ACGT	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	103, 196
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	749
Kpn2I	TCCGGA	1 cut(s)	577
Kzo9I	GATC	1 cut(s)	406
LpnPI	CCDG	7 cut(s)	24, 51, 90, 296, 480, 591, 681
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	6 cut(s)	95, 258, 264, 428, 465, 534
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	6 cut(s)	107, 272, 371, 422, 484, 709
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	6 cut(s)	26, 53, 56, 181, 257, 347
MluCI	AATT	3 cut(s)	251, 295, 389
MlyI	GAGTC	3 cut(s)	79, 188, 539
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	8 cut(s)	128, 296, 316, 370, 493, 560, 607, 628
MroI	TCCGGA	1 cut(s)	577
MseI	TTAA	3 cut(s)	219, 294, 820
MslI	CAYNNNNRTG	3 cut(s)	347, 764, 766
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	578
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	2 cut(s)	564, 754
NspV	TTCGAA	1 cut(s)	243
OliI	CACNNNNGTG	2 cut(s)	347, 764
PceI	AGGCCT	2 cut(s)	207, 638
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	134, 174, 537
PflFI	GACNNNGTC	1 cut(s)	718
PflMI	CCANNNNNTGG	2 cut(s)	17, 289
PleI	GAGTC	3 cut(s)	79, 188, 538
PpsI	GAGTC	3 cut(s)	79, 188, 538
PspN4I	GGNNCC	2 cut(s)	564, 754
PspPI	GGNCC	1 cut(s)	753
PsyI	GACNNNGTC	1 cut(s)	718
RseI	CAYNNNNRTG	3 cut(s)	347, 764, 766
SaqAI	TTAA	3 cut(s)	219, 294, 820
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	753
SchI	GAGTC	3 cut(s)	79, 188, 539
SfaNI	GCATC	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	3 cut(s)	347, 764, 766
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	251, 295, 389
SseBI	AGGCCT	2 cut(s)	207, 638
SsiI	CCGC	1 cut(s)	547
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	6 cut(s)	95, 258, 264, 428, 465, 534
StuI	AGGCCT	2 cut(s)	207, 638
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	124, 346, 600, 718, 730
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	5 cut(s)	243, 360, 440, 513, 690
TasI	AATT	3 cut(s)	251, 295, 389
TfiI	GAWTC	3 cut(s)	134, 174, 537
Tru1I	TTAA	3 cut(s)	219, 294, 820
Tru9I	TTAA	3 cut(s)	219, 294, 820
TscAI	CASTG	3 cut(s)	204, 349, 409
TspDTI	ATGAA	2 cut(s)	402, 734
TspRI	CASTG	3 cut(s)	204, 349, 409
Tth111I	GACNNNGTC	1 cut(s)	718
Van91I	CCANNNNNTGG	2 cut(s)	17, 289
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	2 cut(s)	251, 389
XbaI	TCTAGA	1 cut(s)	533
XspI	CTAG	6 cut(s)	95, 258, 264, 428, 465, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.