AT2G24080

cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Reverse (-)
10237604 .. 10238779
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24080.1

Sequence Viewer

Length: 1125 bp
ATGGATGGACTAGATGATCGACCAGCATCCGTAGCTGAAGTTGGTAATTCAAAACGAAGCGGGAGTCCTAAATATAATGAGCGTGCTAAGACCCCACGTCTGGATCCAAAACTCGGATCTCCGTTGCTGTTGTTGTCTCCAGAAGAGGGTGGTTTTCGTCTGTACAAGCCAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTAGCAAGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTATATCATAGATGTGTTTAGCGATGAGAGGATCAGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTTTATATGGTTGAGCGAGAAGGATCTAATGACTTCAAGGTTACGTTAATTGGAGGCAGTCTGAAAGACGACAAGAATGGTGACTTTGTTGTTGTCTGGCAATTTGAGCAAGGCCAATTTTTAGGGTTTTGCAAGAAAGGAGATTTACATTACCGTGATATTCCAATACGTGTCGATGTTCGGAGGGAGTTCCGAGGCCTACAAGATGTGGTGCTCAAGGGTTACAATCTTTACATTCTGGTGAACCGTAGCTTCATTCGACACATTGATTTGTCCGGACAAGATGGTTTCAAGAATGTGTCCGAAACCCCTAGGTTTCCAATATCGGTTTCAGCCTTTGGGCGTGATTTAGGAATATCGGAAATCAAAAAGGTCATCTCTTTTAGCGATAGCATTGCTGTTACAACATCAGGAGATGTTTTGTTGGTCTTTACCACGGCTTTCGAGTCACTCGGTGAAAGGTCTAGGATCTTCCACGTCTACAAGAGGGATCCGGAAAAAGAGCTAAAAGGAAATATATGTGGAACCAGTCTTGTTGAGGTGGAATCTATAGGTGACGAGGCCCTGTTTTTCGATTTCGGTATCACCGTGCCTGCTGACCATACCCTTGGTATTGAGCCTAATTGCATCTATTTCACTCGTAATGACCGTTTCGGTCACAAGGACGGTTCCATTCCATGCCTAGTCGACATATGTGTGTACAACATTGCAACAAGGACCTTCAAACGCTTCCCTAGTCTGTCCAACTTAAAACTCAAGGATGCTATGTGGTTTCTCCCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

374

Amino Acids

42.26

Weight (kDa)

5.72

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 54 - 348 7.6e-44 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 819, 1026
AccIII TCCGGA 2 cut(s) 614, 832
AciI CCGC 1 cut(s) 60
AclWI GGATC 9 cut(s) 98, 111, 124, 276, 311, 370, 815, 824, 837
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 2 cut(s) 164, 1040
AfiI CCNNNNNNNGG 4 cut(s) 100, 113, 146, 346
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 4 cut(s) 51, 376, 631, 1063
AhdI GACNNNNNGTC 1 cut(s) 96
AjiI CACGTC 2 cut(s) 98, 817
AjnI CCWGG 1 cut(s) 330
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AluBI AGCT 4 cut(s) 35, 231, 591, 844
AluI AGCT 4 cut(s) 35, 231, 591, 844
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 141, 185
AlwI GGATC 9 cut(s) 98, 111, 124, 276, 311, 370, 815, 824, 837
Ama87I CYCGRG 1 cut(s) 232
Aor13HI TCCGGA 2 cut(s) 614, 832
AoxI GGCC 4 cut(s) 337, 451, 535, 900
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AspA2I CCTAGG 1 cut(s) 650
AspS9I GGNCC 2 cut(s) 901, 1056
AsuHPI GGTGA 5 cut(s) 431, 592, 806, 905, 916
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 1056
AvrII CCTAGG 1 cut(s) 650
BamHI GGATCC 2 cut(s) 103, 829
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 555
BccI CCATC 2 cut(s) 258, 617
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 141, 185
BfaI CTAG 9 cut(s) 11, 224, 248, 261, 320, 651, 804, 1022, 1074
BfmI CTRYAG 1 cut(s) 888
BlnI CCTAGG 1 cut(s) 650
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 1056
BmeRI GACNNNNNGTC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 232
BmgBI CACGTC 2 cut(s) 98, 817
BmgT120I GGNCC 2 cut(s) 901, 1056
BmiI GGNNCC 5 cut(s) 105, 245, 831, 865, 1009
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 35, 975, 1090
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 539, 1079
Bsa29I ATCGAT 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 6 cut(s) 330, 331, 532, 650, 774, 946
BsaWI WCCGGW 2 cut(s) 614, 832
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 113, 146, 346
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 2 cut(s) 732, 1044
BseAI TCCGGA 2 cut(s) 614, 832
BseBI CCWGG 1 cut(s) 332
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 6 cut(s) 330, 331, 532, 650, 774, 946
BseGI GGATG 3 cut(s) 10, 26, 1105
BseLI CCNNNNNNNGG 4 cut(s) 100, 113, 146, 346
BseMI GCAATG 2 cut(s) 732, 1044
BseNI ACTGG 1 cut(s) 867
BshFI GGCC 4 cut(s) 339, 453, 537, 902
BshVI ATCGAT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 615, 833
BslI CCNNNNNNNGG 4 cut(s) 100, 113, 146, 346
BsmAI GTCTC 2 cut(s) 141, 185
BsmBI CGTCTC 1 cut(s) 185
BsnI GGCC 4 cut(s) 339, 453, 537, 902
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 555
Bsp13I TCCGGA 2 cut(s) 614, 832
Bsp1407I TGTACA 2 cut(s) 162, 1038
Bsp143I GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
BspACI CCGC 1 cut(s) 60
BspANI GGCC 4 cut(s) 339, 453, 537, 902
BspDI ATCGAT 1 cut(s) 217
BspEI TCCGGA 2 cut(s) 614, 832
BspLI GGNNCC 5 cut(s) 105, 245, 831, 865, 1009
BspPI GGATC 9 cut(s) 98, 111, 124, 276, 311, 370, 815, 824, 837
BsrDI GCAATG 2 cut(s) 732, 1044
BsrGI TGTACA 2 cut(s) 162, 1038
BsrI ACTGG 1 cut(s) 867
BssECI CCNNGG 6 cut(s) 330, 331, 532, 650, 774, 946
BssMI GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
BssT1I CCWWGG 2 cut(s) 650, 946
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 5 cut(s) 494, 587, 928, 989, 1007
Bst6I CTCTTC 2 cut(s) 138, 191
BstAUI TGTACA 2 cut(s) 162, 1038
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 84, 229, 933
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 774
BstF5I GGATG 3 cut(s) 10, 26, 1105
BstKTI GATC 8 cut(s) 19, 106, 119, 271, 306, 365, 810, 832
BstMAI GTCTC 2 cut(s) 141, 185
BstMBI GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
BstMWI GCNNNNNNNGC 2 cut(s) 32, 445
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 6 cut(s) 103, 116, 268, 362, 807, 829
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 6 cut(s) 103, 116, 268, 362, 807, 829
Bsu15I ATCGAT 1 cut(s) 217
BsuRI GGCC 4 cut(s) 339, 453, 537, 902
BsuTUI ATCGAT 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 774
BtgZI GCGATG 1 cut(s) 309
BtrI CACGTC 2 cut(s) 98, 817
BtsCI GGATG 3 cut(s) 10, 26, 1105
Cac8I GCNNGC 3 cut(s) 84, 229, 933
Cfr13I GGNCC 2 cut(s) 901, 1056
ClaI ATCGAT 1 cut(s) 217
Csp6I GTAC 2 cut(s) 163, 1039
CviAII CATG 1 cut(s) 1017
CviQI GTAC 2 cut(s) 163, 1039
DdeI CTNAG 1 cut(s) 87
DpnI GATC 8 cut(s) 18, 105, 118, 270, 305, 364, 809, 831
DpnII GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
DraIII CACNNNGTG 1 cut(s) 794
DriI GACNNNNNGTC 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 138, 191
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 2 cut(s) 138, 191
Eco130I CCWWGG 2 cut(s) 650, 946
Eco147I AGGCCT 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 1056
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 232
EcoO109I RGGNCCY 2 cut(s) 901, 1056
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 650, 946
ErhI CCWWGG 2 cut(s) 650, 946
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 1 cut(s) 1020
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 1016
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 1031
FblI GTMKAC 2 cut(s) 819, 1026
FokI GGATG 3 cut(s) 13, 17, 1112
FspBI CTAG 9 cut(s) 11, 224, 248, 261, 320, 651, 804, 1022, 1074
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 4 cut(s) 339, 453, 537, 902
HapII CCGG 2 cut(s) 615, 833
Hin1II CATG 1 cut(s) 1020
HincII GTYRAC 2 cut(s) 327, 1027
HindII GTYRAC 2 cut(s) 327, 1027
HinfI GANTC 6 cut(s) 64, 219, 257, 323, 785, 884
HpaII CCGG 2 cut(s) 615, 833
HphI GGTGA 5 cut(s) 431, 592, 806, 905, 916
Hpy166II GTNNAC 5 cut(s) 327, 583, 820, 1027, 1039
Hpy188I TCNGA 6 cut(s) 116, 402, 522, 533, 643, 700
Hpy188III TCNNGA 9 cut(s) 101, 140, 261, 320, 615, 631, 750, 833, 1122
Hpy8I GTNNAC 5 cut(s) 327, 583, 820, 1027, 1039
HpyAV CCTTC 2 cut(s) 353, 1069
HpyCH4III ACNGT 5 cut(s) 494, 587, 928, 989, 1007
HpyCH4IV ACGT 4 cut(s) 97, 383, 508, 816
HpyCH4V TGCA 3 cut(s) 471, 966, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 445
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 4 cut(s) 97, 383, 508, 816
Hsp92II CATG 1 cut(s) 1020
Kpn2I TCCGGA 2 cut(s) 614, 832
Kzo9I GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
LweI GCATC 3 cut(s) 35, 975, 1090
MaeI CTAG 9 cut(s) 11, 224, 248, 261, 320, 651, 804, 1022, 1074
MaeII ACGT 4 cut(s) 97, 383, 508, 816
MaeIII GTNAC 8 cut(s) 200, 379, 419, 560, 739, 786, 893, 995
MalI GATC 8 cut(s) 18, 105, 118, 270, 305, 364, 809, 831
MboI GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
MboII GAAGA 5 cut(s) 155, 188, 208, 302, 802
MflI RGATCY 6 cut(s) 103, 116, 268, 362, 807, 829
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 5 cut(s) 46, 387, 440, 455, 961
MlyI GAGTC 3 cut(s) 73, 332, 794
MmeI TCCRAC 1 cut(s) 1107
MnlI CCTC 9 cut(s) 139, 294, 327, 386, 516, 527, 819, 871, 892
MroI TCCGGA 2 cut(s) 614, 832
MseI TTAA 2 cut(s) 386, 1088
MslI CAYNNNNRTG 4 cut(s) 284, 492, 578, 1034
MspI CCGG 2 cut(s) 615, 833
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 32, 445
NdeI CATATG 1 cut(s) 1031
NdeII GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
NlaIII CATG 1 cut(s) 1020
NlaIV GGNNCC 5 cut(s) 105, 245, 831, 865, 1009
NmuCI GTSAC 5 cut(s) 200, 419, 786, 893, 995
PasI CCCWGGG 1 cut(s) 331
PceI AGGCCT 1 cut(s) 537
PcsI WCGNNNNNNNCGW 2 cut(s) 924, 985
PfeI GAWTC 3 cut(s) 219, 257, 884
PleI GAGTC 3 cut(s) 72, 331, 793
PpsI GAGTC 3 cut(s) 72, 331, 793
Ppu21I YACGTR 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 5 cut(s) 105, 245, 831, 865, 1009
PspPI GGNCC 2 cut(s) 901, 1056
PspPPI RGGWCCY 1 cut(s) 1056
PsuI RGATCY 6 cut(s) 103, 116, 268, 362, 807, 829
RsaI GTAC 2 cut(s) 164, 1040
RsaNI GTAC 2 cut(s) 163, 1039
RseI CAYNNNNRTG 4 cut(s) 284, 492, 578, 1034
SalI GTCGAC 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 386, 1088
Sau3AI GATC 8 cut(s) 16, 103, 116, 268, 303, 362, 807, 829
Sau96I GGNCC 2 cut(s) 901, 1056
SchI GAGTC 3 cut(s) 73, 332, 794
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 3 cut(s) 35, 975, 1090
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 1056
SmiMI CAYNNNNRTG 4 cut(s) 284, 492, 578, 1034
SmlI CTYRAG 2 cut(s) 554, 1094
SmoI CTYRAG 2 cut(s) 554, 1094
Sse9I AATT 5 cut(s) 46, 387, 440, 455, 961
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 1 cut(s) 60
SspMI CTAG 9 cut(s) 11, 224, 248, 261, 320, 651, 804, 1022, 1074
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 2 cut(s) 650, 946
TaaI ACNGT 5 cut(s) 494, 587, 928, 989, 1007
TaiI ACGT 4 cut(s) 100, 386, 511, 819
TaqI TCGA 7 cut(s) 19, 217, 513, 598, 783, 912, 1026
TaqII GACCGA 1 cut(s) 983
TasI AATT 5 cut(s) 46, 387, 440, 455, 961
TatI WGTACW 2 cut(s) 162, 1038
TfiI GAWTC 3 cut(s) 219, 257, 884
Tru1I TTAA 2 cut(s) 386, 1088
Tru9I TTAA 2 cut(s) 386, 1088
TseFI GTSAC 5 cut(s) 200, 419, 786, 893, 995
Tsp45I GTSAC 5 cut(s) 200, 419, 786, 893, 995
TspDTI ATGAA 1 cut(s) 583
TspGWI ACGGA 2 cut(s) 19, 111
VpaK11BI GGWCC 1 cut(s) 1056
XbaI TCTAGA 2 cut(s) 260, 319
XmaJI CCTAGG 1 cut(s) 650
XmiI GTMKAC 2 cut(s) 819, 1026
XspI CTAG 9 cut(s) 11, 224, 248, 261, 320, 651, 804, 1022, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.