Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

6057288 .. 6058620

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGAACTCCAAATCCTCGCACCTGGTCGGAGCTCCCTCCAGATTTGCTGGGATCTATTTTTCATCGATTAAGCTTTACCGATTTTCACCGCGCGAAGATTGTTTGTTGGAACTGGAACTTGAGTTCGAAGCTAACAGTTCCCAAGAAAATAAGATCTCCATGGCTGATGCTGTTTCCAGAAGGAGATAACGAAGATGGTTCTGTGCTACTGTTCAATCCAGAAGAAGAAGAAAAGATTTACAAGACAAAGAGATACTTTTCAGGGATTCGATTCCTTGCAAACTCGGGTAAATGGTTCCTATTGATAGACTCTCTATTCAATCTCTATATCATTGATGTGTTTAGCGAGAACAAGATAGATCTTCTGCCTCTAGAAGAGTCTCTACTAGATAAAGAGGAATCCGAAGATTTAACGGGTCTTTTGTGGGTAGACGAAAAGACGGCAGAGTACGTTGTAGTCTTGTTCTTCAACTTCCCTAGCGGAAATGTTGGCTTTTGCAAGAAAGGTGATGATCATTACACTAAAATTCCGCTGCATTGCGGAGTCCCGTGGAGGTTACAAGGGTTAATAGATGCGGTGCTCTTGGGTTACCGTCTTTACATCCGCACGGAGCTTAGTTACATTCGTATCCTAGATTTGTCTACACAACAAGGTTTCGAGGATGTTAACAAGTACGAACCATTCCAAGTGTTTTCTTCAACTCAAGATTGTAGCATTGCGGTTACAACACGAGGAGAGGTTTTGTTGGTCAAGAGCATCCTCGACAACACAACCATTGGAAGCCATAGGAGGTTTTGCATCTTCAAGAATATAGACTACAATCCGCAAGAAGAGGTTGATTCTCTAGGTGATGAGGCCTTGCTTCTTAACTTAGGTATTCTCTTGCCTAGCATCGCACCAAACTCCATCTATTTTACCCGTCATGGTCGTATCTATCACAAGGAGCATTTTAACCTGGACTTATGTGTGTTCAATCTCGAAACAAAAACCCTCAAACGCTTCCCTAGTCTCGCCAATATGAAGCTCAAGGATGCTCAATGGTTTTTCCCTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

353

Amino Acids

40.84

Weight (kDa)

5.58

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 40	5.6e-07	F-box domain
F-box-like	PF12937	9 - 40	5e-06	F-box-like
Beta-prop_KIB1-4	PF03478	72 - 326	3.8e-30	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	432, 644
AccII	CGCG	2 cut(s)	93, 95
AciI	CCGC	8 cut(s)	91, 483, 533, 543, 578, 607, 722, 827
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	528
AfaI	GTAC	2 cut(s)	452, 677
AgsI	TTSAA	6 cut(s)	217, 322, 472, 702, 808, 976
AjnI	CCWGG	3 cut(s)	23, 957, 1051
AloI	GAACNNNNNNTCC	3 cut(s)	30, 109, 141
AluBI	AGCT	5 cut(s)	34, 75, 133, 616, 1027
AluI	AGCT	5 cut(s)	34, 75, 133, 616, 1027
Alw21I	GWGCWC	2 cut(s)	36, 585
Alw26I	GTCTC	2 cut(s)	387, 1016
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	858
ApeKI	GCWGC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	80, 521, 863
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BanII	GRGCYC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BauI	CACGAG	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	36, 585
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	191, 917
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	25, 959, 1053
BciVI	GTATCC	1 cut(s)	641
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	387, 1016
BfaI	CTAG	7 cut(s)	374, 389, 480, 635, 848, 891, 1008
BfuI	GTATCC	1 cut(s)	641
BglII	AGATCT	2 cut(s)	155, 361
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	3 cut(s)	25, 959, 1053
BmeT110I	CYCGRG	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	3 cut(s)	25, 959, 1053
BmsI	GCATC	6 cut(s)	159, 565, 768, 810, 903, 1024
BpmI	CTGGAG	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	3 cut(s)	142, 690, 1013
Bsa29I	ATCGAT	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	161, 551, 1051
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	538, 717
BseBI	CCWGG	3 cut(s)	25, 959, 1053
BseCI	ATCGAT	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	161, 551, 1051
BseGI	GGATG	4 cut(s)	603, 670, 759, 1039
BseMI	GCAATG	2 cut(s)	538, 717
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	93, 95
BshFI	GGCC	1 cut(s)	860
BshVI	ATCGAT	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	36, 585
BsiHKCI	CYCGRG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	533
BsmAI	GTCTC	2 cut(s)	387, 1016
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	36, 585
Bsp143I	GATC	4 cut(s)	53, 155, 361, 514
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	8 cut(s)	91, 483, 533, 543, 578, 607, 722, 827
BspANI	GGCC	1 cut(s)	860
BspDI	ATCGAT	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	93, 95
BspLI	GGNNCC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	538, 717
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	161, 551, 1051
BssMI	GATC	4 cut(s)	53, 155, 361, 514
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	25, 959, 1053
Bst4CI	ACNGT	3 cut(s)	139, 213, 596
Bst6I	CTCTTC	2 cut(s)	372, 828
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	617, 874
BstDSI	CCRYGG	2 cut(s)	161, 551
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	603, 670, 759, 1039
BstFNI	CGCG	2 cut(s)	93, 95
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	56, 158, 364, 517
BstMAI	GTCTC	2 cut(s)	387, 1016
BstMBI	GATC	4 cut(s)	53, 155, 361, 514
BstNI	CCWGG	3 cut(s)	25, 959, 1053
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	3 cut(s)	23, 957, 1051
BstUI	CGCG	2 cut(s)	93, 95
BstV1I	GCAGC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	53, 155, 361
BstYI	RGATCY	3 cut(s)	53, 155, 361
Bsu15I	ATCGAT	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	860
BsuTUI	ATCGAT	1 cut(s)	67
BtgI	CCRYGG	2 cut(s)	161, 551
BtgZI	GCGATG	1 cut(s)	880
BtsCI	GGATG	4 cut(s)	603, 670, 759, 1039
CfoI	GCGC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	451, 676
CviAII	CATG	2 cut(s)	162, 926
CviJI	RGCY	9 cut(s)	34, 75, 133, 166, 495, 616, 786, 860, 1027
CviKI_1	RGCY	9 cut(s)	34, 75, 133, 166, 495, 616, 786, 860, 1027
CviQI	GTAC	2 cut(s)	451, 676
DdeI	CTNAG	2 cut(s)	617, 874
DpnI	GATC	4 cut(s)	55, 157, 363, 516
DpnII	GATC	4 cut(s)	53, 155, 361, 514
Eam1104I	CTCTTC	2 cut(s)	372, 828
EarI	CTCTTC	2 cut(s)	372, 828
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	860
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	23, 957, 1051
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	165, 929
FaiI	YATR	7 cut(s)	163, 330, 789, 815, 927, 967, 1022
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	161, 925
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	2 cut(s)	432, 644
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	4 cut(s)	590, 677, 746, 1046
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	7 cut(s)	374, 389, 480, 635, 848, 891, 1008
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	536
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	165, 929
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	7 cut(s)	268, 273, 311, 380, 401, 546, 842
HpaI	GTTAAC	1 cut(s)	670
HphI	GGTGA	3 cut(s)	80, 521, 863
Hpy166II	GTNNAC	3 cut(s)	433, 645, 670
Hpy188I	TCNGA	2 cut(s)	31, 406
Hpy188III	TCNNGA	8 cut(s)	41, 179, 221, 374, 707, 754, 808, 980
Hpy8I	GTNNAC	3 cut(s)	433, 645, 670
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	139, 213, 596
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	281, 501, 538, 801
HpyF3I	CTNAG	2 cut(s)	617, 874
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	165, 929
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	4 cut(s)	53, 155, 361, 514
LmnI	GCTCC	4 cut(s)	31, 39, 613, 946
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	6 cut(s)	159, 565, 768, 810, 903, 1024
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	7 cut(s)	374, 389, 480, 635, 848, 891, 1008
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	4 cut(s)	558, 590, 620, 724
MalI	GATC	4 cut(s)	55, 157, 363, 516
MboI	GATC	4 cut(s)	53, 155, 361, 514
MflI	RGATCY	3 cut(s)	53, 155, 361
MhlI	GDGCHC	2 cut(s)	36, 585
MluCI	AATT	1 cut(s)	528
MlyI	GAGTC	3 cut(s)	305, 389, 555
MmeI	TCCRAC	2 cut(s)	9, 89
MseI	TTAA	6 cut(s)	71, 413, 569, 669, 870, 954
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	535
MspR9I	CCNGG	3 cut(s)	25, 959, 1053
MvaI	CCWGG	3 cut(s)	25, 959, 1053
MvnI	CGCG	2 cut(s)	93, 95
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	4 cut(s)	53, 155, 361, 514
NlaIII	CATG	2 cut(s)	165, 929
NlaIV	GGNNCC	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	860
PfeI	GAWTC	4 cut(s)	268, 273, 401, 842
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	3 cut(s)	305, 388, 554
PpsI	GAGTC	3 cut(s)	305, 388, 554
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	23, 957, 1051
PspEI	GGTNACC	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	3 cut(s)	23, 957, 1051
PspN4I	GGNNCC	1 cut(s)	299
PsuI	RGATCY	3 cut(s)	53, 155, 361
RsaI	GTAC	2 cut(s)	452, 677
RsaNI	GTAC	2 cut(s)	451, 676
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	6 cut(s)	71, 413, 569, 669, 870, 954
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	4 cut(s)	53, 155, 361, 514
SchI	GAGTC	3 cut(s)	305, 389, 555
ScrFI	CCNGG	3 cut(s)	25, 959, 1053
SduI	GDGCHC	2 cut(s)	36, 585
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	6 cut(s)	159, 565, 768, 810, 903, 1024
SfuI	TTCGAA	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	121, 705, 1028
SmoI	CTYRAG	3 cut(s)	121, 705, 1028
Sse9I	AATT	1 cut(s)	528
SseBI	AGGCCT	1 cut(s)	860
SsiI	CCGC	8 cut(s)	91, 483, 533, 543, 578, 607, 722, 827
SspMI	CTAG	7 cut(s)	374, 389, 480, 635, 848, 891, 1008
SstI	GAGCTC	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	860
StyD4I	CCNGG	3 cut(s)	23, 957, 1051
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	139, 213, 596
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	6 cut(s)	67, 128, 271, 660, 765, 981
TasI	AATT	1 cut(s)	528
TfiI	GAWTC	4 cut(s)	268, 273, 401, 842
Tru1I	TTAA	6 cut(s)	71, 413, 569, 669, 870, 954
Tru9I	TTAA	6 cut(s)	71, 413, 569, 669, 870, 954
TseI	GCWGC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	53, 1037
TspGWI	ACGGA	1 cut(s)	626
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	432, 644
XspI	CTAG	7 cut(s)	374, 389, 480, 635, 848, 891, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.