AT2G03610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Forward (+)
1099070 .. 1100202
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03610.1

Sequence Viewer

Length: 651 bp
ATGGAGACGCCGAACGATTTGGTGAAAGAAGAGAAGAGACAAGGAGCTTCTGAAAATCAAGATTGGTCCAAGCTTTGTCCTGATCTTTTGCGACCGATCCTGGAAAGCTTGAGCTCTATTGATTTTCATCGAGCAAAAACCGTTTGTTCAGATTGGTATTCCGTTTGGAAAACATGCAAAGGATATGATTCGAAGTGGAATCAAAACAGTGGAAGTATTTTCGATATGGCTTATAAGAACAGCAAGCTTTATCTGTATACTTTGGATCATCACATCAAGATTTATGATTTCTCTGGAGATTCTCCCAAAGAAGAAGGATTGACAAACCCGTATTCGAATCATCCATTTCGCTTCGATGAGAAACCGCAGGAATACATTTGGAAGAGGAAAATAGTGATTGCAGAATCAGGAGAGATGATGAATGAGATGTTGATCTTTGGTCATGGGGTTACAATGAGAGCACAAGTTCATGATGTTGGTGATGGAATCAAGAGGGATTCAATCTGTTTCGTTGAAGATGATCTTTGGCCGGATTTTGATCGTCCTTCAAATTGCGGTATCTTCAATCTTGCCACAAGTAGAATAACATGGCCTAAGAGATACGGTGTTTACATAGATCAAAAACAATGGTTTCTTCCAGGATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

216

Amino Acids

25.27

Weight (kDa)

5.7

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 61 1e-06 F-box domain
Beta-prop_KIB1-4 PF03478 58 - 139 3e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccI GTMKAC 1 cut(s) 257
AciI CCGC 2 cut(s) 365, 555
AclWI GGATC 2 cut(s) 91, 273
AcoI YGGCCR 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 8
AgsI TTSAA 4 cut(s) 501, 515, 549, 565
AjnI CCWGG 2 cut(s) 99, 637
AluBI AGCT 5 cut(s) 47, 73, 108, 114, 247
AluI AGCT 5 cut(s) 47, 73, 108, 114, 247
Alw21I GWGCWC 2 cut(s) 116, 463
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 2 cut(s) 91, 273
AoxI GGCC 2 cut(s) 527, 590
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 34, 491
AsuII TTCGAA 2 cut(s) 191, 335
AvaII GGWCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 116, 463
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 101, 639
BcoDI GTCTC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 101, 639
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 101, 639
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 2 cut(s) 191, 335
BpuEI CTTGAG 1 cut(s) 130
BsaBI GATNNNNATC 3 cut(s) 126, 431, 537
BsaHI GRCGYC 1 cut(s) 8
Bse8I GATNNNNATC 3 cut(s) 126, 431, 537
BseBI CCWGG 2 cut(s) 101, 639
BseGI GGATG 1 cut(s) 340
BseJI GATNNNNATC 3 cut(s) 126, 431, 537
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 529, 592
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 116, 463
BsiSI CCGG 1 cut(s) 530
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 2 cut(s) 529, 592
Bsp119I TTCGAA 2 cut(s) 191, 335
Bsp1286I GDGCHC 2 cut(s) 116, 463
Bsp143I GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
BspACI CCGC 2 cut(s) 365, 555
BspANI GGCC 2 cut(s) 529, 592
BspHI TCATGA 1 cut(s) 469
BspPI GGATC 2 cut(s) 91, 273
BspT104I TTCGAA 2 cut(s) 191, 335
BssMI GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
BssNAI GTATAC 1 cut(s) 258
BssNI GRCGYC 1 cut(s) 8
Bst1107I GTATAC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 101, 639
Bst4CI ACNGT 3 cut(s) 142, 209, 605
Bst6I CTCTTC 3 cut(s) 24, 29, 377
BstACI GRCGYC 1 cut(s) 8
BstBI TTCGAA 2 cut(s) 191, 335
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 594, 648
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 7 cut(s) 85, 99, 268, 435, 523, 541, 619
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
BstMCI CGRYCG 1 cut(s) 95
BstNI CCWGG 2 cut(s) 101, 639
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 99, 637
BstZ17I GTATAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 529, 592
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 245
CciI TCATGA 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 66
CseI GACGC 1 cut(s) 16
CviAII CATG 4 cut(s) 174, 443, 470, 588
CviJI RGCY 8 cut(s) 47, 73, 108, 114, 230, 247, 529, 592
CviKI_1 RGCY 8 cut(s) 47, 73, 108, 114, 230, 247, 529, 592
DdeI CTNAG 2 cut(s) 594, 648
DpnI GATC 7 cut(s) 84, 98, 267, 434, 522, 540, 618
DpnII GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
EaeI YGGCCR 1 cut(s) 527
Eam1104I CTCTTC 3 cut(s) 24, 29, 377
EarI CTCTTC 3 cut(s) 24, 29, 377
Ecl136II GAGCTC 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 99, 637
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 4 cut(s) 177, 446, 473, 591
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FatI CATG 4 cut(s) 173, 442, 469, 587
FblI GTMKAC 1 cut(s) 257
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 2 cut(s) 529, 592
HapII CCGG 1 cut(s) 530
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 4 cut(s) 177, 446, 473, 591
HindIII AAGCTT 3 cut(s) 71, 106, 245
HinfI GANTC 7 cut(s) 188, 199, 299, 337, 404, 486, 497
HpaII CCGG 1 cut(s) 530
HphI GGTGA 2 cut(s) 34, 491
Hpy166II GTNNAC 2 cut(s) 258, 610
Hpy188I TCNGA 2 cut(s) 52, 151
Hpy188III TCNNGA 7 cut(s) 59, 80, 277, 294, 408, 470, 490
Hpy8I GTNNAC 2 cut(s) 258, 610
HpyAV CCTTC 2 cut(s) 308, 555
HpyCH4III ACNGT 3 cut(s) 142, 209, 605
HpyCH4V TGCA 2 cut(s) 177, 401
HpyF3I CTNAG 2 cut(s) 594, 648
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 4 cut(s) 177, 446, 473, 591
Kzo9I GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 86, 93, 113, 279, 353, 393, 543, 624
MaeIII GTNAC 1 cut(s) 448
MalI GATC 7 cut(s) 84, 98, 267, 434, 522, 540, 618
MboI GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
MboII GAAGA 7 cut(s) 41, 46, 323, 394, 527, 553, 626
MhlI GDGCHC 2 cut(s) 116, 463
MluCI AATT 1 cut(s) 550
MnlI CCTC 2 cut(s) 378, 486
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 2 cut(s) 101, 639
MvaI CCWGG 2 cut(s) 101, 639
NdeII GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
NlaIII CATG 4 cut(s) 177, 446, 473, 591
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 2 cut(s) 191, 335
PagI TCATGA 1 cut(s) 469
PfeI GAWTC 7 cut(s) 188, 199, 299, 337, 404, 486, 497
PfoI TCCNGGA 2 cut(s) 99, 637
PsiI TTATAA 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 99, 637
PspGI CCWGG 2 cut(s) 99, 637
PspPI GGNCC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 116
Sau3AI GATC 7 cut(s) 82, 96, 265, 432, 520, 538, 616
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 101, 639
SduI GDGCHC 2 cut(s) 116, 463
SetI ASST 5 cut(s) 49, 75, 110, 116, 249
SfuI TTCGAA 2 cut(s) 191, 335
SinI GGWCC 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 550
SsiI CCGC 2 cut(s) 365, 555
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 99, 637
TaaI ACNGT 3 cut(s) 142, 209, 605
TaqI TCGA 5 cut(s) 130, 191, 222, 335, 354
TaqII GACCGA 1 cut(s) 109
TasI AATT 1 cut(s) 550
TfiI GAWTC 7 cut(s) 188, 199, 299, 337, 404, 486, 497
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 116, 434, 458
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 66
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.