AT2G05970

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Reverse (-)
2308651 .. 2309784
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05970.1

Sequence Viewer

Length: 1134 bp
ATGATCGAAACAAATAAGAAAGCTAGTTGGTCAGAGCTTTGTCCAGACGTGTTGCGATGTGTTTTCGAACTATTGAGTTTCTCGGATCTTAATCGAACTAGATCAGTTTGTTCATCGTGGCACTCTGCTTCGAGACACTGCGTCCCAACACAAAATCAGATTCCATGGCTAATTTTATTCCCTCGAAACAACGTCAATAACAACAACAACAATAGTTGTGTGTTGTTTGTTCCAGATGATAGAGATAGTCTTTACAAAACCAAAGATCTTGGTGTTGGCTTTATGCTGAGTAATTGTCTAGCTACTTACGGTAGTTGGATCCTAATGATGGATCGTCTCTGTAATCTCAACATTTTGAATCCCTTAACCGGTGAGAAGATTGATCTACCACGTACAAAGTTTGATCTACCAAGGTTGGAATCTAGTGTAGCATGTCTTTGGATAGACGAGAAAACAAAAGATTATATAGTTGTGTGGAAGATAAAAAACTCTTTAGTCTACGCCAAGAAAGGGAATCACACGTGGCAACAAGTTTTCTCTATGAACGAAGAACTATCCGTAGAACAAATTGTTTACGAACACAAGACTCAAAAACTTTACGTACATTTTAATGATTCTACTTTAAGTATTTGGCGTTTGTCTAGAGAGGATCCACATGGTGTTTTTGAAAATTATATTCCATTTGACTTTGTTTTTCAAGACTTCCTTCCGGATAGAAGAACTGACGAAGAGTTATATGTGAAAGAGTATATTGACACGAGGCTAAACATTGCACTAACAACATCTGGAGAACTCTTGAAGGTAGCTAGTGTAGTGCAAAAGTCCAAAAGATGGCTCTTTCGCATCTACAAGATGAACTATATCAAGCGTCGTTGGGAAAGAATCGAGTCTTTGGGCGATGAGGCATTGATCTTAGATATGGGTATTACTATTGTTGCCAAAGACATCCCCGGGCTCAAGAGAAACTCAATTTATATTAGTGGGTTTGATTATGGTAGAAAACATCTAGACCATATATTTATCTTTGATCTTACAACCCAAGAGAGTGAACCTTTGCCATATTGTGTTTCCTCCTCCAATGATTTCTCTGATGCTCGATGGTTCTTCCCAAGTTTCAGTCAATCTCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

377

Amino Acids

44.21

Weight (kDa)

6.47

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 47 3.4e-08 F-box domain
Beta-prop_KIB1-4 PF03478 82 - 343 3.2e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 831
AccI GTMKAC 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 709
AclWI GGATC 6 cut(s) 93, 313, 326, 339, 644, 657
AcvI CACGTG 1 cut(s) 522
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 2 cut(s) 394, 603
AfiI CCNNNNNNNGG 4 cut(s) 328, 368, 510, 831
AflIII ACRYGT 2 cut(s) 48, 519
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 358, 668, 698, 799
AhdI GACNNNNNGTC 1 cut(s) 140
AjiI CACGTC 1 cut(s) 49
AluBI AGCT 4 cut(s) 23, 37, 302, 806
AluI AGCT 4 cut(s) 23, 37, 302, 806
Alw26I GTCTC 2 cut(s) 127, 341
AlwI GGATC 6 cut(s) 93, 313, 326, 339, 644, 657
Ama87I CYCGRG 1 cut(s) 950
Aor13HI TCCGGA 1 cut(s) 709
AsiGI ACCGGT 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 951, 952
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 950
BamHI GGATCC 2 cut(s) 318, 649
BanII GRGCYC 1 cut(s) 957
BauI CACGAG 1 cut(s) 757
BbrPI CACGTG 1 cut(s) 522
BccI CCATC 3 cut(s) 322, 825, 1092
BcnI CCSGG 2 cut(s) 951, 952
BcoDI GTCTC 2 cut(s) 127, 341
BfaI CTAG 7 cut(s) 24, 99, 299, 423, 642, 807, 1007
BglII AGATCT 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 951, 952
BmeRI GACNNNNNGTC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 950
BmgBI CACGTC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 320, 651
BmrFI CCNGG 2 cut(s) 951, 952
BmsI GCATC 2 cut(s) 852, 1081
BpmI CTGGAG 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 2 cut(s) 951, 952
BsaAI YACGTR 3 cut(s) 392, 522, 601
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 164, 410, 949, 950
BsaWI WCCGGW 2 cut(s) 368, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 328, 368, 510, 831
Bse118I RCCGGY 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 90
BseAI TCCGGA 1 cut(s) 709
BseDI CCNNGG 4 cut(s) 164, 410, 949, 950
BseGI GGATG 1 cut(s) 945
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 4 cut(s) 328, 368, 510, 831
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 1063
BshTI ACCGGT 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 950
BsiSI CCGG 3 cut(s) 369, 710, 951
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 4 cut(s) 328, 368, 510, 831
BsmAI GTCTC 2 cut(s) 127, 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 950
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 957
Bsp13I TCCGGA 1 cut(s) 709
Bsp19I CCATGG 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 320, 651
BspPI GGATC 6 cut(s) 93, 313, 326, 339, 644, 657
BspT104I TTCGAA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 4 cut(s) 164, 410, 949, 950
BssSI CACGAG 1 cut(s) 757
BssT1I CCWWGG 2 cut(s) 164, 410
Bst2BI CACGAG 1 cut(s) 757
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 723
BstBAI YACGTR 3 cut(s) 392, 522, 601
BstBI TTCGAA 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 287, 913
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 945
BstMAI GTCTC 2 cut(s) 127, 341
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 2 cut(s) 949, 950
BstSNI TACGTA 1 cut(s) 601
BstX2I RGATCY 4 cut(s) 85, 265, 318, 649
BstYI RGATCY 4 cut(s) 85, 265, 318, 649
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 2 cut(s) 70, 912
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 945
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 368
Cfr9I CCCGGG 1 cut(s) 950
CseI GACGC 2 cut(s) 130, 857
Csp6I GTAC 2 cut(s) 393, 602
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 3 cut(s) 165, 432, 656
CviJI RGCY 9 cut(s) 23, 37, 169, 279, 302, 763, 806, 835, 955
CviKI_1 RGCY 9 cut(s) 23, 37, 169, 279, 302, 763, 806, 835, 955
CviQI GTAC 2 cut(s) 393, 602
DdeI CTNAG 2 cut(s) 287, 913
DraIII CACNNNGTG 1 cut(s) 659
DriI GACNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 723
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 723
Eco105I TACGTA 1 cut(s) 601
Eco130I CCWWGG 2 cut(s) 164, 410
Eco24I GRGCYC 1 cut(s) 957
Eco72I CACGTG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 950
EcoT14I CCWWGG 2 cut(s) 164, 410
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 2 cut(s) 164, 410
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 3 cut(s) 168, 435, 659
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 164, 431, 655
FblI GTMKAC 1 cut(s) 498
FokI GGATG 1 cut(s) 932
FriOI GRGCYC 1 cut(s) 957
FspBI CTAG 7 cut(s) 24, 99, 299, 423, 642, 807, 1007
GsuI CTGGAG 1 cut(s) 807
HapII CCGG 3 cut(s) 369, 710, 951
HgaI GACGC 2 cut(s) 130, 857
Hin1II CATG 3 cut(s) 168, 435, 659
HinfI GANTC 8 cut(s) 160, 358, 419, 514, 586, 614, 882, 887
HpaII CCGG 3 cut(s) 369, 710, 951
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 3 cut(s) 499, 574, 1049
Hpy188I TCNGA 4 cut(s) 34, 85, 159, 1090
Hpy8I GTNNAC 3 cut(s) 499, 574, 1049
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 2 cut(s) 716, 793
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 5 cut(s) 48, 192, 391, 521, 600
HpyCH4V TGCA 2 cut(s) 773, 817
HpyF3I CTNAG 2 cut(s) 287, 913
HpySE526I ACGT 5 cut(s) 48, 192, 391, 521, 600
Hsp92II CATG 3 cut(s) 168, 435, 659
Kpn2I TCCGGA 1 cut(s) 709
LpnPI CCDG 6 cut(s) 57, 246, 382, 723, 771, 964
LweI GCATC 2 cut(s) 852, 1081
MaeI CTAG 7 cut(s) 24, 99, 299, 423, 642, 807, 1007
MaeII ACGT 5 cut(s) 48, 192, 391, 521, 600
MboII GAAGA 6 cut(s) 388, 490, 560, 729, 740, 1096
MflI RGATCY 4 cut(s) 85, 265, 318, 649
MhlI GDGCHC 1 cut(s) 957
MluCI AATT 5 cut(s) 171, 292, 567, 670, 969
MlyI GAGTC 2 cut(s) 580, 896
MmeI TCCRAC 2 cut(s) 296, 396
MnlI CCTC 6 cut(s) 192, 640, 753, 895, 1081, 1084
MroI TCCGGA 1 cut(s) 709
MseI TTAA 4 cut(s) 90, 365, 609, 623
MslI CAYNNNNRTG 1 cut(s) 609
MspI CCGG 3 cut(s) 369, 710, 951
MspR9I CCNGG 2 cut(s) 951, 952
NciI CCSGG 2 cut(s) 951, 952
NcoI CCATGG 1 cut(s) 164
NlaIII CATG 3 cut(s) 168, 435, 659
NlaIV GGNNCC 2 cut(s) 320, 651
NspI RCATGY 1 cut(s) 435
NspV TTCGAA 1 cut(s) 66
PfeI GAWTC 6 cut(s) 160, 358, 419, 514, 614, 882
PflMI CCANNNNNTGG 1 cut(s) 831
PinAI ACCGGT 1 cut(s) 368
PleI GAGTC 2 cut(s) 580, 895
PmaCI CACGTG 1 cut(s) 522
PmlI CACGTG 1 cut(s) 522
PpsI GAGTC 2 cut(s) 580, 895
Ppu21I YACGTR 3 cut(s) 392, 522, 601
PspCI CACGTG 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 320, 651
PsuI RGATCY 4 cut(s) 85, 265, 318, 649
RsaI GTAC 2 cut(s) 394, 603
RsaNI GTAC 2 cut(s) 393, 602
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 4 cut(s) 90, 365, 609, 623
SchI GAGTC 2 cut(s) 580, 896
ScrFI CCNGG 2 cut(s) 951, 952
SduI GDGCHC 1 cut(s) 957
SfaNI GCATC 2 cut(s) 852, 1081
SfuI TTCGAA 1 cut(s) 66
SmaI CCCGGG 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
SnaBI TACGTA 1 cut(s) 601
Sse9I AATT 5 cut(s) 171, 292, 567, 670, 969
SspMI CTAG 7 cut(s) 24, 99, 299, 423, 642, 807, 1007
StyD4I CCNGG 2 cut(s) 949, 950
StyI CCWWGG 2 cut(s) 164, 410
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 5 cut(s) 51, 195, 394, 524, 603
TaqI TCGA 7 cut(s) 6, 66, 94, 131, 184, 885, 1096
TasI AATT 5 cut(s) 171, 292, 567, 670, 969
TfiI GAWTC 6 cut(s) 160, 358, 419, 514, 614, 882
Tru1I TTAA 4 cut(s) 90, 365, 609, 623
Tru9I TTAA 4 cut(s) 90, 365, 609, 623
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 102, 557, 869
TspGWI ACGGA 1 cut(s) 547
TspMI CCCGGG 1 cut(s) 950
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 831
XbaI TCTAGA 2 cut(s) 641, 1006
XceI RCATGY 1 cut(s) 435
XmaI CCCGGG 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 7 cut(s) 24, 99, 299, 423, 642, 807, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.