Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

14069541 .. 14070671

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCGAGAACTCGTTATGATTGGTCCAAGCTTTGTCACGATATTTTGCGATTGATACTCGAAAGCTTGCACTACAAGGATTATCATCGAGCAAGAACCGTTTGCTCTAACTGGTACACAGCTTCCACAACGTGTAAGCGACCTCTGTATCCATGGCGAATCAAATTCAACAAGATTTCAACTTCACTCTTCGATCCAAGAGAAGACAAGATCCACGAAATTCAACATCCCGGAATCGAATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTGGTTTAGAATTCTATCTCCTGAATGCTTTCACTCGTGAGAGAATCAATCTTCCATCGATGGAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCATCGAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAACAGGGGATTATGTTGTGGCTTGGAGTATCAAACAGCACTATTTGTTCACTTACAAGAAAGGAGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTGAATAAGGACTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGTGAGTTTCCTAGTGAGATTGTCGAGGAGAATCCGTATCGCAACCATCCGTTTAGCTTTCGGTTTGTTTCGAAGCCCGAGGAACACGCTTGGAAGCAGGTTGTAGCGATTACTAACTCTGGAGAGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGAAGATAAGCGTTTGTTTTATATATATAAGATGGATTTTGGAAGTTGTAACTGGGAGAGAGTAGATTCTCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGATATTAATGGTTTGGGAATCAAGAGTGATTCAATCTGTTTCCGCGGTGATGATCTTTGGCCACTTAGTCAGCTTTTTATTCCCATCACACAACCTATGTGCGGTGTATTTGATCTTGCGACAAGTACAATCACATGGCCTAAATCATTAGATGCTTCAGTCTTGAAGAGTTTCTGGTTTGTTCCAGGACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

376

Amino Acids

43.83

Weight (kDa)

7.15

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	7.2e-08	F-box domain
Beta-prop_KIB1-4	PF03478	63 - 340	7.5e-46	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	739
AccII	CGCG	1 cut(s)	978
AciI	CCGC	3 cut(s)	976, 978, 1035
AclWI	GGATC	2 cut(s)	188, 205
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	4 cut(s)	164, 219, 239, 305
AcuI	CTGAAG	1 cut(s)	1074
AdeI	CACNNNGTG	2 cut(s)	132, 570
AfaI	GTAC	3 cut(s)	116, 424, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	8 cut(s)	169, 180, 224, 553, 560, 589, 966, 1099
AjnI	CCWGG	1 cut(s)	1117
AluBI	AGCT	8 cut(s)	31, 66, 122, 267, 604, 708, 795, 1006
AluI	AGCT	8 cut(s)	31, 66, 122, 267, 604, 708, 795, 1006
Alw21I	GWGCWC	1 cut(s)	925
AlwI	GGATC	2 cut(s)	188, 205
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	2 cut(s)	992, 1070
ApeKI	GCWGC	2 cut(s)	267, 270
ApoI	RAATTY	4 cut(s)	164, 219, 239, 305
AseI	ATTAAT	1 cut(s)	939
Asp700I	GAANNNNTTC	3 cut(s)	323, 410, 1103
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	665, 896, 992
AsuII	TTCGAA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BalI	TGGCCA	1 cut(s)	994
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	2 cut(s)	254, 282
BccI	CCATC	7 cut(s)	280, 349, 358, 638, 705, 832, 1025
BciT130I	CCWGG	1 cut(s)	1119
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	2 cut(s)	264, 663
BfmI	CTRYAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	739
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	268, 271
BlsI	GCNGC	2 cut(s)	269, 272
Bme1390I	CCNGG	2 cut(s)	231, 1119
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	231, 1119
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	1 cut(s)	1075
BmtI	GCTAGC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	868
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	231
Bsa29I	ATCGAT	2 cut(s)	353, 365
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	152, 729, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse1I	ACTGG	2 cut(s)	116, 863
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	1119
BseCI	ATCGAT	2 cut(s)	353, 365
BseDI	CCNNGG	3 cut(s)	152, 729, 976
BseGI	GGATG	2 cut(s)	226, 697
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseNI	ACTGG	2 cut(s)	116, 863
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	254, 282
Bsh1236I	CGCG	1 cut(s)	978
BshFI	GGCC	2 cut(s)	994, 1072
BshVI	ATCGAT	2 cut(s)	353, 365
BsiHKAI	GWGCWC	1 cut(s)	925
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	994, 1072
BsoBI	CYCGRG	1 cut(s)	728
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	3 cut(s)	976, 978, 1035
BspANI	GGCC	2 cut(s)	994, 1072
BspDI	ATCGAT	2 cut(s)	353, 365
BspFNI	CGCG	1 cut(s)	978
BspMAI	CTGCAG	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	739
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	188, 205
BspT104I	TTCGAA	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	116, 863
BssECI	CCNNGG	3 cut(s)	152, 729, 976
BssMI	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	1119
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	194, 1094
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	68, 265
BstDEI	CTNAG	3 cut(s)	567, 931, 998
BstDSI	CCRYGG	2 cut(s)	152, 976
BstEII	GGTNACC	1 cut(s)	910
BstF5I	GGATG	2 cut(s)	226, 697
BstFNI	CGCG	1 cut(s)	978
BstKTI	GATC	6 cut(s)	196, 213, 789, 930, 988, 1048
BstMBI	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
BstNI	CCWGG	1 cut(s)	1119
BstNSI	RCATGY	1 cut(s)	1127
BstPI	GGTNACC	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	229, 1117
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	978
BstV1I	GCAGC	2 cut(s)	254, 282
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu15I	ATCGAT	2 cut(s)	353, 365
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	994, 1072
BsuTUI	ATCGAT	2 cut(s)	353, 365
BtgI	CCRYGG	2 cut(s)	152, 976
BtsCI	GGATG	2 cut(s)	226, 697
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	2 cut(s)	68, 265
Cfr13I	GGNCC	1 cut(s)	24
Cfr42I	CCGCGG	1 cut(s)	979
ClaI	ATCGAT	2 cut(s)	353, 365
Csp6I	GTAC	3 cut(s)	115, 423, 1059
CviAII	CATG	5 cut(s)	153, 546, 905, 1068, 1124
CviQI	GTAC	3 cut(s)	115, 423, 1059
DdeI	CTNAG	3 cut(s)	567, 931, 998
DpnI	GATC	6 cut(s)	195, 212, 788, 929, 987, 1047
DpnII	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
DraIII	CACNNNGTG	2 cut(s)	132, 570
EaeI	YGGCCR	1 cut(s)	992
Eam1104I	CTCTTC	2 cut(s)	194, 1094
EarI	CTCTTC	2 cut(s)	194, 1094
Eco130I	CCWWGG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	1074
Eco88I	CYCGRG	1 cut(s)	728
Eco91I	GGTNACC	1 cut(s)	910
EcoO65I	GGTNACC	1 cut(s)	910
EcoRI	GAATTC	2 cut(s)	239, 305
EcoRII	CCWGG	1 cut(s)	1117
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	5 cut(s)	156, 549, 908, 1071, 1127
FatI	CATG	5 cut(s)	152, 545, 904, 1067, 1123
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	2 cut(s)	213, 684
Fsp4HI	GCNGC	2 cut(s)	268, 271
FspBI	CTAG	2 cut(s)	264, 663
GluI	GCNGC	2 cut(s)	268, 271
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	2 cut(s)	994, 1072
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	5 cut(s)	156, 549, 908, 1071, 1127
HindIII	AAGCTT	3 cut(s)	29, 64, 602
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	3 cut(s)	665, 896, 992
Hpy166II	GTNNAC	2 cut(s)	117, 522
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	2 cut(s)	117, 522
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	70, 270, 617
HpyF3I	CTNAG	3 cut(s)	567, 931, 998
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	156, 549, 908, 1071, 1127
KspI	CCGCGG	1 cut(s)	979
Kzo9I	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
Lsp1109I	GCAGC	2 cut(s)	254, 282
LweI	GCATC	1 cut(s)	1075
MaeI	CTAG	2 cut(s)	264, 663
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	35, 854, 910
MalI	GATC	6 cut(s)	195, 212, 788, 929, 987, 1047
MboI	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
MboII	GAAGA	5 cut(s)	181, 215, 338, 821, 1111
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	925
MlsI	TGGCCA	1 cut(s)	994
MluCI	AATT	5 cut(s)	164, 219, 239, 274, 305
MluNI	TGGCCA	1 cut(s)	994
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	5 cut(s)	153, 670, 724, 769, 875
Mox20I	TGGCCA	1 cut(s)	994
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	3 cut(s)	323, 410, 1103
MscI	TGGCCA	1 cut(s)	994
MseI	TTAA	2 cut(s)	797, 939
Msp20I	TGGCCA	1 cut(s)	994
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	231, 1119
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	1119
MvnI	CGCG	1 cut(s)	978
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	5 cut(s)	156, 549, 908, 1071, 1127
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	1127
NspV	TTCGAA	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	3 cut(s)	323, 410, 1103
PfoI	TCCNGGA	2 cut(s)	229, 1117
PkrI	GCNGC	2 cut(s)	269, 272
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	1117
PspEI	GGTNACC	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	1117
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	3 cut(s)	116, 424, 1060
RsaNI	GTAC	3 cut(s)	115, 423, 1059
SacII	CCGCGG	1 cut(s)	979
SaqAI	TTAA	2 cut(s)	797, 939
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	6 cut(s)	193, 210, 786, 927, 985, 1045
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	231, 1119
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	1 cut(s)	1075
SfcI	CTRYAG	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	979
SfuI	TTCGAA	1 cut(s)	722
SgrBI	CCGCGG	1 cut(s)	979
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	5 cut(s)	164, 219, 239, 274, 305
SsiI	CCGC	3 cut(s)	976, 978, 1035
SspMI	CTAG	2 cut(s)	264, 663
StyD4I	CCNGG	2 cut(s)	229, 1117
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	134
TasI	AATT	5 cut(s)	164, 219, 239, 274, 305
TatI	WGTACW	1 cut(s)	1058
Tru1I	TTAA	2 cut(s)	797, 939
Tru9I	TTAA	2 cut(s)	797, 939
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	267, 270
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	403, 534
TspGWI	ACGGA	2 cut(s)	675, 690
VpaK11BI	GGWCC	1 cut(s)	24
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	4 cut(s)	164, 219, 239, 305
XceI	RCATGY	1 cut(s)	1127
XmnI	GAANNNNTTC	3 cut(s)	323, 410, 1103
XspI	CTAG	2 cut(s)	264, 663
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.