Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9828258 .. 9829884

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTGAAGATCAAGGATCCCAATTACTTGAAACTTCTTAAAGTGTTCGATGAGCTCCAAAAAGTTATTGATGGAATCATCAACAGCAGAAGGAGGTGGTCCGAGCTCCCGACTGACCTTGTAGAATTGATCTTGAAAAAGCTTATACCTTCTGAATTCGACCTCCTTGGCTTTAGAGACATCCTTCGCTCTAAACTCGTTTGTCATTCTTGGAGAAGTGTTGCAAAATCTTGTAGCTCTTACGCTCCTTTGTGTCAAACCCCATGGCTTCTGCTTCATCAGAATAACAGATCCTCCCTTTTTGATCCAGCAGAAAGAAAGGTTTACAAAATCAGGAATGTCTATGAGGATTTTCCTTGTGCCAGGTGTGTGGGTTCATCACATGGGTGGATGATCATATTCTACGAAGACATACATTCCCAAGAGTCAATGGCACATCTTTTTAATCCAATTTCAAGAAGTAGCATTCCACTTCCAGGCATTCAGACTCTTCAAAGTTACCGTATTTCTAAAGGTATTATTTCCTCCAATCCATTTACCAACAAAAACTTTTTTGTGGTAGTGGCATGTCATGGAGGACTTGCATTCTATAAACATGAAGACAAATCATGGACTAAGTTCAATGATGCTCTTAGCCATCTCTATGACGATATTATGTTTTACAATGACAAGCTATTTGCATTGGCTATGGAGTCACTTGAGGTCTGGGACTGTAGTGGATCCTCTCCTATAAAGACCGTGCATCTTCAGGACTCTGTTTCTCACATATCAGTTGATCATACCTATTTGGTGGAGTCATTGGGCGAGATCTTACGTGTGGGAAAAGGTGGACGACGTACTACTTCACACTTTTTTGTGGAAAAGTTAAATCTGACCGATGGGAAGTGGGAGAAAGTGCAAAATTTAGGTGACCAAATTCTATTTTTGTTTCATAATCAGTTACTGTCACTACCTAACCAATGTTTCCTAGGATGTGAAGAAAACTCAATCTACTACGGAACGAGTGATTGTGTCACACATTGTGGTCAAGAAATTGGAATATACAACCTTCAATACAACATGGTTCGTAGGATGGAGACCATATGTATTCTAATTGGCAAACATCTCGAAGAACTAAAGCATTGTTATAATGCACAACCTGTTTGGATGGTTCCGAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

388

Amino Acids

44.8

Weight (kDa)

7.23

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	100 - 349	6.2e-47	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1128
AclWI	GGATC	6 cut(s)	11, 24, 285, 299, 714, 727
AcsI	RAATTY	3 cut(s)	155, 901, 915
AcuI	CTGAAG	1 cut(s)	731
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	1 cut(s)	838
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	6 cut(s)	31, 136, 456, 494, 622, 1052
AjnI	CCWGG	2 cut(s)	362, 475
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	5 cut(s)	55, 106, 142, 237, 673
AluI	AGCT	5 cut(s)	55, 106, 142, 237, 673
Alw21I	GWGCWC	2 cut(s)	57, 108
Alw26I	GTCTC	2 cut(s)	171, 1070
AlwI	GGATC	6 cut(s)	11, 24, 285, 299, 714, 727
AlwNI	CAGNNNCTG	1 cut(s)	943
ApoI	RAATTY	3 cut(s)	155, 901, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspA2I	CCTAGG	1 cut(s)	967
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	16, 920
AvaII	GGWCC	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	967
BamHI	GGATCC	2 cut(s)	16, 719
BanII	GRGCYC	2 cut(s)	57, 108
BbsI	GAAGAC	2 cut(s)	414, 606
Bbv12I	GWGCWC	2 cut(s)	57, 108
BccI	CCATC	5 cut(s)	65, 645, 872, 1066, 1141
BcgI	CGANNNNNNTGC	2 cut(s)	1087, 1121
BciT130I	CCWGG	2 cut(s)	364, 477
BclI	TGATCA	2 cut(s)	393, 775
BcoDI	GTCTC	2 cut(s)	171, 1070
BfaI	CTAG	1 cut(s)	968
BfmI	CTRYAG	1 cut(s)	712
BglII	AGATCT	1 cut(s)	807
BlnI	CCTAGG	1 cut(s)	967
Bme1390I	CCNGG	2 cut(s)	364, 477
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	18, 721, 1152
BmrFI	CCNGG	2 cut(s)	364, 477
BmsI	GCATC	2 cut(s)	616, 751
BpiI	GAAGAC	2 cut(s)	414, 606
BpuEI	CTTGAG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	1070
BsaJI	CCNNGG	4 cut(s)	166, 263, 967, 1160
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	364, 477
BseDI	CCNNGG	4 cut(s)	166, 263, 967, 1160
BseGI	GGATG	5 cut(s)	180, 396, 977, 1077, 1152
BseLI	CCNNNNNNNGG	1 cut(s)	476
BsiHKAI	GWGCWC	2 cut(s)	57, 108
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	171, 1070
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	3 cut(s)	465, 480, 584
Bso31I	GGTCTC	1 cut(s)	1070
Bsp1286I	GDGCHC	2 cut(s)	57, 108
Bsp143I	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
Bsp19I	CCATGG	2 cut(s)	263, 1160
BspLI	GGNNCC	3 cut(s)	18, 721, 1152
BspPI	GGATC	6 cut(s)	11, 24, 285, 299, 714, 727
BspTNI	GGTCTC	1 cut(s)	1070
BssECI	CCNNGG	4 cut(s)	166, 263, 967, 1160
BssMI	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
BssT1I	CCWWGG	4 cut(s)	166, 263, 967, 1160
Bst2UI	CCWGG	2 cut(s)	364, 477
Bst4CI	ACNGT	4 cut(s)	503, 713, 739, 945
Bst6I	CTCTTC	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	815
BstDEI	CTNAG	2 cut(s)	615, 632
BstDSI	CCRYGG	2 cut(s)	263, 1160
BstEII	GGTNACC	1 cut(s)	908
BstF5I	GGATG	5 cut(s)	180, 396, 977, 1077, 1152
BstKTI	GATC	9 cut(s)	12, 19, 132, 293, 307, 396, 722, 778, 810
BstMAI	GTCTC	2 cut(s)	171, 1070
BstMBI	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
BstNI	CCWGG	2 cut(s)	364, 477
BstNSI	RCATGY	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	908
BstSCI	CCNGG	2 cut(s)	362, 475
BstSFI	CTRYAG	1 cut(s)	712
BstV2I	GAAGAC	2 cut(s)	414, 606
BstX2I	RGATCY	4 cut(s)	16, 290, 719, 807
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	4 cut(s)	16, 290, 719, 807
BtgI	CCRYGG	2 cut(s)	263, 1160
BtsCI	GGATG	5 cut(s)	180, 396, 977, 1077, 1152
CaiI	CAGNNNCTG	1 cut(s)	943
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	837
CviAII	CATG	8 cut(s)	264, 383, 567, 572, 596, 609, 1060, 1161
CviJI	RGCY	9 cut(s)	55, 106, 142, 171, 237, 268, 636, 673, 686
CviKI_1	RGCY	9 cut(s)	55, 106, 142, 171, 237, 268, 636, 673, 686
CviQI	GTAC	1 cut(s)	837
DdeI	CTNAG	2 cut(s)	615, 632
DpnI	GATC	9 cut(s)	11, 18, 131, 292, 306, 395, 721, 777, 809
DpnII	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
DraIII	CACNNNGTG	1 cut(s)	1022
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	2 cut(s)	55, 106
Eco130I	CCWWGG	4 cut(s)	166, 263, 967, 1160
Eco24I	GRGCYC	2 cut(s)	57, 108
Eco31I	GGTCTC	1 cut(s)	1070
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	2 cut(s)	55, 106
Eco57I	CTGAAG	1 cut(s)	731
Eco91I	GGTNACC	1 cut(s)	908
EcoICRI	GAGCTC	2 cut(s)	55, 106
EcoO65I	GGTNACC	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	362, 475
EcoT14I	CCWWGG	4 cut(s)	166, 263, 967, 1160
EcoT38I	GRGCYC	2 cut(s)	57, 108
ErhI	CCWWGG	4 cut(s)	166, 263, 967, 1160
FaeI	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1063, 1164
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	8 cut(s)	263, 382, 566, 571, 595, 608, 1059, 1160
FauNDI	CATATG	1 cut(s)	1082
FbaI	TGATCA	2 cut(s)	393, 775
FokI	GGATG	5 cut(s)	167, 403, 984, 1084, 1159
FriOI	GRGCYC	2 cut(s)	57, 108
FspBI	CTAG	1 cut(s)	968
Hin1II	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1063, 1164
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	7 cut(s)	75, 425, 487, 692, 752, 794, 1156
HphI	GGTGA	2 cut(s)	16, 920
Hpy166II	GTNNAC	2 cut(s)	325, 830
Hpy188I	TCNGA	6 cut(s)	103, 154, 282, 486, 873, 1155
Hpy188III	TCNNGA	7 cut(s)	109, 133, 334, 456, 749, 1028, 1106
Hpy8I	GTNNAC	2 cut(s)	325, 830
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	4 cut(s)	84, 159, 194, 1058
HpyCH4III	ACNGT	4 cut(s)	503, 713, 739, 945
HpyCH4IV	ACGT	2 cut(s)	814, 835
HpyCH4V	TGCA	6 cut(s)	224, 584, 680, 742, 898, 1133
HpyF3I	CTNAG	2 cut(s)	615, 632
HpySE526I	ACGT	2 cut(s)	814, 835
Hsp92II	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1063, 1164
Ksp22I	TGATCA	2 cut(s)	393, 775
Kzo9I	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
LmnI	GCTCC	3 cut(s)	60, 111, 250
LpnPI	CCDG	9 cut(s)	319, 321, 349, 376, 462, 489, 691, 734, 1152
LweI	GCATC	2 cut(s)	616, 751
MaeI	CTAG	1 cut(s)	968
MaeII	ACGT	2 cut(s)	814, 835
MaeIII	GTNAC	6 cut(s)	497, 693, 908, 939, 945, 1012
MalI	GATC	9 cut(s)	11, 18, 131, 292, 306, 395, 721, 777, 809
MboI	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
MboII	GAAGA	7 cut(s)	19, 419, 482, 611, 737, 989, 1121
MflI	RGATCY	4 cut(s)	16, 290, 719, 807
MhlI	GDGCHC	2 cut(s)	57, 108
MluCI	AATT	8 cut(s)	22, 125, 155, 450, 901, 915, 1032, 1092
MlyI	GAGTC	5 cut(s)	434, 481, 701, 746, 803
MnlI	CCTC	8 cut(s)	87, 173, 304, 340, 535, 569, 694, 733
MseI	TTAA	3 cut(s)	39, 444, 866
MslI	CAYNNNNRTG	2 cut(s)	385, 642
MspR9I	CCNGG	2 cut(s)	364, 477
Mva1269I	GAATGC	3 cut(s)	465, 480, 584
MvaI	CCWGG	2 cut(s)	364, 477
NcoI	CCATGG	2 cut(s)	263, 1160
NdeI	CATATG	1 cut(s)	1082
NdeII	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
NlaIII	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1063, 1164
NlaIV	GGNNCC	3 cut(s)	18, 721, 1152
NmuCI	GTSAC	4 cut(s)	693, 908, 945, 1012
NspI	RCATGY	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	385
PctI	GAATGC	3 cut(s)	465, 480, 584
PfeI	GAWTC	2 cut(s)	75, 1156
PleI	GAGTC	5 cut(s)	433, 481, 700, 746, 802
PpsI	GAGTC	5 cut(s)	433, 481, 700, 746, 802
Ppu21I	YACGTR	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	1128
Psp124BI	GAGCTC	2 cut(s)	57, 108
Psp6I	CCWGG	2 cut(s)	362, 475
PspEI	GGTNACC	1 cut(s)	908
PspGI	CCWGG	2 cut(s)	362, 475
PspN4I	GGNNCC	3 cut(s)	18, 721, 1152
PspPI	GGNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	943
PsuI	RGATCY	4 cut(s)	16, 290, 719, 807
RsaI	GTAC	1 cut(s)	838
RsaNI	GTAC	1 cut(s)	837
RseI	CAYNNNNRTG	2 cut(s)	385, 642
SacI	GAGCTC	2 cut(s)	57, 108
SaqAI	TTAA	3 cut(s)	39, 444, 866
Sau3AI	GATC	9 cut(s)	9, 16, 129, 290, 304, 393, 719, 775, 807
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	5 cut(s)	434, 481, 701, 746, 803
ScrFI	CCNGG	2 cut(s)	364, 477
SduI	GDGCHC	2 cut(s)	57, 108
SfaNI	GCATC	2 cut(s)	616, 751
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	385, 642
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	8 cut(s)	22, 125, 155, 450, 901, 915, 1032, 1092
SspMI	CTAG	1 cut(s)	968
SstI	GAGCTC	2 cut(s)	57, 108
StyD4I	CCNGG	2 cut(s)	362, 475
StyI	CCWWGG	4 cut(s)	166, 263, 967, 1160
TaaI	ACNGT	4 cut(s)	503, 713, 739, 945
TaiI	ACGT	2 cut(s)	817, 838
TaqI	TCGA	3 cut(s)	48, 159, 1107
TaqII	GACCGA	1 cut(s)	890
TasI	AATT	8 cut(s)	22, 125, 155, 450, 901, 915, 1032, 1092
TfiI	GAWTC	2 cut(s)	75, 1156
Tru1I	TTAA	3 cut(s)	39, 444, 866
Tru9I	TTAA	3 cut(s)	39, 444, 866
TseFI	GTSAC	4 cut(s)	693, 908, 945, 1012
Tsp45I	GTSAC	4 cut(s)	693, 908, 945, 1012
TspDTI	ATGAA	4 cut(s)	266, 366, 612, 920
TspGWI	ACGGA	1 cut(s)	1011
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	3 cut(s)	155, 901, 915
XceI	RCATGY	1 cut(s)	570
XmaJI	CCTAGG	1 cut(s)	967
XspI	CTAG	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.