Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

14067866 .. 14069149

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCTAGAGATGATAATGGTTGGTCAAAGCTTTATCCTGATCTTTTGCGATCGATATTCGAAAGCTTGAGTTGCTTGGATTTTCATCGAGCAGGAACCGTTTGTTCAAACTGGTATGCCGTATCTCGATCATGTCCTCTGTATCCATGGAGAATCGTATTCCGAGGTAAGAATTCTGTCTTGTTTGATCCAATACAAGACAAGATCTACACCAAAAATCTTCTTGGAATCGACTTGTCCAAAATCCATTGTCTTGCTAGTTATGGTAATTGGATCCTAATCGTAGATCCTCGTTTAGATTTCTACCTCTTGAACGTGTTTACTCGCGAGACGATCAATCTTCCTTCATTAGAGTCATCGCTACGTGGTGATCGTCCTTTTAGATTCATACGAAATGATGACGAGTCTGGATACTTTCTTGAGCTCTACGGCACCAAGTTTCTCTTGACGTGGAACGATTTTAGGTTTGAGAAAACTGCTATCCTGTGGGTAAACGGGAGAAATGGAGATTACGTTGTTGCTTGGGCTATCAAACAGTTCTATATCTTCTCATACAAAAAAATAGGAAATGATGATGATGATAAGCGATGGAGTATCACATGCACACAATGTGAGGATATGGCTTATAAAGATAACAAGCTTTATGTGTATACATTTGATCATTACATCAACATTCTTGATTTCTCTGGAAATTCTCCTAAAGAACCCATGGAAGAAAACCCTTATCTTAGTCATCCTTTTAGTTTCGTAGATGCGATTTATAAGTTGAGACTTGCGGTCACAAGGGAAGGAAAGGTTCTAATCGTTCTGAGTTTAGTAGGGTTAGATAAAAAGATTTGCATCTACAAGCTGAATCTTAAGATTGGTGATTGGGAAATAGTAGAGTCCTTGGGAGATGAAATGTTGATTTTTGGTCATGGGGTCACAATAAGAGCACCGGACAAAGATATTAGTGGGGGAGGACTCAAGAGTGATTCAATATGTTTTCTTTATGATGACTATTTGTCTGATCATTATCTTACAATGAAGAGACAACCAATTTGCGGTGTGTTCGATCTTGCGACAAGTACAATCACATGGCATACAAGATTAGAAGACCTGTCTTCGAAGATTTGTTGGTTTGTTCCAGGATGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

379

Amino Acids

43.98

Weight (kDa)

5.86

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 48	2.6e-06	F-box domain
Beta-prop_KIB1-4	PF03478	61 - 351	1.5e-41	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 762
AccB1I	GGYRCC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	650
AccII	CGCG	1 cut(s)	327
AciI	CCGC	2 cut(s)	776, 1044
AclWI	GGATC	4 cut(s)	182, 268, 281, 281
AcsI	RAATTY	2 cut(s)	172, 691
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	1069
AfiI	CCNNNNNNNGG	1 cut(s)	1043
AflII	CTTAAG	1 cut(s)	857
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	108, 313, 978
AhdI	GACNNNNNGTC	2 cut(s)	776, 1003
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	1126
AluBI	AGCT	5 cut(s)	31, 66, 424, 640, 850
AluI	AGCT	5 cut(s)	31, 66, 424, 640, 850
Alw21I	GWGCWC	2 cut(s)	426, 937
Alw26I	GTCTC	3 cut(s)	323, 763, 1024
AlwI	GGATC	4 cut(s)	182, 268, 281, 281
ApoI	RAATTY	2 cut(s)	172, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
AsuHPI	GGTGA	2 cut(s)	380, 878
AsuII	TTCGAA	2 cut(s)	60, 1106
BamHI	GGATCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	1095, 1101
Bbv12I	GWGCWC	2 cut(s)	426, 937
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	2 cut(s)	104, 445
BciT130I	CCWGG	1 cut(s)	1128
BciVI	GTATCC	2 cut(s)	153, 404
BclI	TGATCA	2 cut(s)	658, 1009
BcoDI	GTCTC	3 cut(s)	323, 763, 1024
BfaI	CTAG	2 cut(s)	6, 258
BfrI	CTTAAG	1 cut(s)	857
BfuI	GTATCC	2 cut(s)	153, 404
BglII	AGATCT	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	1128
BmeRI	GACNNNNNGTC	2 cut(s)	776, 1003
BmgBI	CACGTC	1 cut(s)	450
BmiI	GGNNCC	3 cut(s)	97, 275, 433
BmrFI	CCNGG	1 cut(s)	1128
BmsI	GCATC	2 cut(s)	742, 849
BpiI	GAAGAC	2 cut(s)	1095, 1101
Bpu14I	TTCGAA	2 cut(s)	60, 1106
BpuEI	CTTGAG	3 cut(s)	88, 440, 950
Bsa29I	ATCGAT	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	365
BsaBI	GATNNNNATC	4 cut(s)	84, 278, 839, 1014
BsaJI	CCNNGG	4 cut(s)	146, 163, 708, 888
BsaWI	WCCGGW	1 cut(s)	937
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	1043
Bse1I	ACTGG	1 cut(s)	116
Bse8I	GATNNNNATC	4 cut(s)	84, 278, 839, 1014
BseBI	CCWGG	1 cut(s)	1128
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	146, 163, 708, 888
BseGI	GGATG	2 cut(s)	733, 1136
BseJI	GATNNNNATC	4 cut(s)	84, 278, 839, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	1043
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	431
BshVI	ATCGAT	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	426, 937
BsiSI	CCGG	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	1043
BsmAI	GTCTC	3 cut(s)	323, 763, 1024
BsmBI	CGTCTC	1 cut(s)	323
Bsp119I	TTCGAA	2 cut(s)	60, 1106
Bsp1286I	GDGCHC	2 cut(s)	426, 937
Bsp19I	CCATGG	2 cut(s)	146, 708
Bsp68I	TCGCGA	1 cut(s)	327
BspACI	CCGC	2 cut(s)	776, 1044
BspCNI	CTCAG	1 cut(s)	801
BspDI	ATCGAT	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	97, 275, 433
BspPI	GGATC	4 cut(s)	182, 268, 281, 281
BspT104I	TTCGAA	2 cut(s)	60, 1106
BspT107I	GGYRCC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	4 cut(s)	146, 163, 708, 888
BssNAI	GTATAC	1 cut(s)	651
BssT1I	CCWWGG	3 cut(s)	146, 708, 888
Bst1107I	GTATAC	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	1128
Bst4CI	ACNGT	2 cut(s)	100, 537
Bst6I	CTCTTC	1 cut(s)	1022
BstAFI	CTTAAG	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	365
BstBI	TTCGAA	2 cut(s)	60, 1106
BstDEI	CTNAG	3 cut(s)	728, 809, 1137
BstDSI	CCRYGG	2 cut(s)	146, 708
BstF5I	GGATG	2 cut(s)	733, 1136
BstFNI	CGCG	1 cut(s)	327
BstMAI	GTCTC	3 cut(s)	323, 763, 1024
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	1128
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	1126
BstUI	CGCG	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	1095, 1101
BstX2I	RGATCY	3 cut(s)	204, 273, 286
BstYI	RGATCY	3 cut(s)	204, 273, 286
BstZ17I	GTATAC	1 cut(s)	651
Bsu15I	ATCGAT	1 cut(s)	53
BsuI	GTATCC	2 cut(s)	153, 404
BsuTUI	ATCGAT	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	146, 708
BtgZI	GCGATG	2 cut(s)	342, 601
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	733, 1136
BtuMI	TCGCGA	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	1068
CviAII	CATG	6 cut(s)	132, 147, 600, 709, 917, 1077
CviJI	RGCY	7 cut(s)	31, 66, 424, 527, 623, 640, 850
CviKI_1	RGCY	7 cut(s)	31, 66, 424, 527, 623, 640, 850
CviQI	GTAC	1 cut(s)	1068
DdeI	CTNAG	3 cut(s)	728, 809, 1137
DraIII	CACNNNGTG	1 cut(s)	611
DriI	GACNNNNNGTC	2 cut(s)	776, 1003
Eam1104I	CTCTTC	1 cut(s)	1022
Eam1105I	GACNNNNNGTC	2 cut(s)	776, 1003
EarI	CTCTTC	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	146, 708, 888
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	1126
EcoT14I	CCWWGG	3 cut(s)	146, 708, 888
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	3 cut(s)	146, 708, 888
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	6 cut(s)	135, 150, 603, 712, 920, 1080
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	6 cut(s)	131, 146, 599, 708, 916, 1076
FbaI	TGATCA	2 cut(s)	658, 1009
FblI	GTMKAC	1 cut(s)	650
FokI	GGATG	1 cut(s)	720
FriOI	GRGCYC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	6, 258
HapII	CCGG	1 cut(s)	938
Hin1II	CATG	6 cut(s)	135, 150, 603, 712, 920, 1080
HindIII	AAGCTT	3 cut(s)	29, 64, 638
HinfI	GANTC	9 cut(s)	153, 228, 353, 384, 404, 853, 884, 963, 974
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	2 cut(s)	380, 878
Hpy166II	GTNNAC	3 cut(s)	321, 493, 651
Hpy188I	TCNGA	3 cut(s)	164, 810, 1009
Hpy8I	GTNNAC	3 cut(s)	321, 493, 651
HpyAV	CCTTC	2 cut(s)	354, 782
HpyCH4III	ACNGT	2 cut(s)	100, 537
HpyCH4IV	ACGT	4 cut(s)	315, 364, 449, 513
HpyCH4V	TGCA	2 cut(s)	603, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	3 cut(s)	728, 809, 1137
HpySE526I	ACGT	4 cut(s)	315, 364, 449, 513
Hsp92II	CATG	6 cut(s)	135, 150, 603, 712, 920, 1080
Ksp22I	TGATCA	2 cut(s)	658, 1009
LpnPI	CCDG	9 cut(s)	51, 78, 97, 393, 497, 672, 951, 1112, 1113
LweI	GCATC	2 cut(s)	742, 849
MaeI	CTAG	2 cut(s)	6, 258
MaeII	ACGT	4 cut(s)	315, 364, 449, 513
MaeIII	GTNAC	2 cut(s)	778, 922
MboII	GAAGA	8 cut(s)	212, 332, 538, 725, 1039, 1095, 1106, 1120
MflI	RGATCY	3 cut(s)	204, 273, 286
MhlI	GDGCHC	2 cut(s)	426, 937
MluCI	AATT	4 cut(s)	172, 268, 691, 1038
MlyI	GAGTC	4 cut(s)	362, 413, 893, 957
MnlI	CCTC	6 cut(s)	147, 158, 300, 317, 607, 953
MseI	TTAA	1 cut(s)	858
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	1 cut(s)	1128
MvaI	CCWGG	1 cut(s)	1128
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	72
NcoI	CCATGG	2 cut(s)	146, 708
NlaIII	CATG	6 cut(s)	135, 150, 603, 712, 920, 1080
NlaIV	GGNNCC	3 cut(s)	97, 275, 433
NmuCI	GTSAC	2 cut(s)	778, 922
NruI	TCGCGA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	603
NspV	TTCGAA	2 cut(s)	60, 1106
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	5 cut(s)	153, 228, 384, 853, 974
PfoI	TCCNGGA	1 cut(s)	1126
Ple19I	CGATCG	1 cut(s)	53
PleI	GAGTC	4 cut(s)	361, 412, 892, 957
PpsI	GAGTC	4 cut(s)	361, 412, 892, 957
Ppu21I	YACGTR	1 cut(s)	365
PsiI	TTATAA	2 cut(s)	627, 762
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	1126
PspGI	CCWGG	1 cut(s)	1126
PspN4I	GGNNCC	3 cut(s)	97, 275, 433
PsuI	RGATCY	3 cut(s)	204, 273, 286
PvuI	CGATCG	1 cut(s)	53
RruI	TCGCGA	1 cut(s)	327
RsaI	GTAC	1 cut(s)	1069
RsaNI	GTAC	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	858
SchI	GAGTC	4 cut(s)	362, 413, 893, 957
ScrFI	CCNGG	1 cut(s)	1128
SduI	GDGCHC	2 cut(s)	426, 937
SfaNI	GCATC	2 cut(s)	742, 849
SfuI	TTCGAA	2 cut(s)	60, 1106
SmlI	CTYRAG	4 cut(s)	67, 419, 857, 965
SmoI	CTYRAG	4 cut(s)	67, 419, 857, 965
Sse9I	AATT	4 cut(s)	172, 268, 691, 1038
SsiI	CCGC	2 cut(s)	776, 1044
SspMI	CTAG	2 cut(s)	6, 258
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	1126
StyI	CCWWGG	3 cut(s)	146, 708, 888
TaaI	ACNGT	2 cut(s)	100, 537
TaiI	ACGT	4 cut(s)	318, 367, 452, 516
TaqI	TCGA	7 cut(s)	53, 60, 88, 127, 231, 1053, 1106
TasI	AATT	4 cut(s)	172, 268, 691, 1038
TatI	WGTACW	1 cut(s)	1067
TfiI	GAWTC	5 cut(s)	153, 228, 384, 853, 974
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TseFI	GTSAC	2 cut(s)	778, 922
Tsp45I	GTSAC	2 cut(s)	778, 922
TspDTI	ATGAA	5 cut(s)	74, 336, 376, 912, 1040
Vha464I	CTTAAG	1 cut(s)	857
XapI	RAATTY	2 cut(s)	172, 691
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	2 cut(s)	6, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.