Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

7899215 .. 7900514

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22345.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAACGGCGCCGAAGAAGAAGTTGATTAGTTCCGACAACGATACAGAGTGGTCGCCGGTTCTTGCCCCTGACCTGATTCGATCGATCTTCGAACGTTTGAACTTTGCGGAGTTTCATCGAGCTATGTCAATTTCTTTAGATTGGTATTCCACTGCGGAATTATGCTACAGACAAAACCCAACTCCATGGCTCATTCTCTTTTCAAACTATAGACATATTTCGTGTAGGTTGTTTGATCCTCTTCATGACAAAACCTACGTAATACGAGACCTAGGGTTTGATTTCCATAGGAGTTGTTGTTTGGCTACTTCTGGTAGCTGGTTGTTGATGTTAGATCATAGAACCGATTTTTATCTTTTGAATCTGTTTACTCGAGAGAGGATTTGTCTTCCGACTTTGGAAGCAATCGATGGATGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCGTGAAGGCTATAGAAGTTATTCTTCTGGTCTAAGCACCAAAGTTGTAATAGAGAATGCGGTGTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCATTGAGTGCTTCTTTGCATATCATAAGAAAGGAGATAATAACAAGACCTGGAAAGTGATTCAATTAAAGAAGAATGAAGAGTGCTCCGATATAGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAATCCAAATCTAAACATTACTGTTTTTGATTTCTCTAGTGGTTCTCCAAATGAATGTGCAAGTTTCACATCTCAGGATATTGGTCTCACATTATATCCACTATCTTGTTTCGGCCATCTTGTTATAACTTTGTCCGGAGAGGTTTTGCTGATCAAAACCCGCCGATATGGGATATATTCCTTTGATGTTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATTTATTCTTTAGGGAATGAAGCAATTCTTTTGGATCTAGGAACAACGATCGCAGCCAAAGATGGTTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

334

Amino Acids

38.75

Weight (kDa)

6.4

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	80 - 330	3.3e-45	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	10
AccIII	TCCGGA	1 cut(s)	839
AciI	CCGC	4 cut(s)	110, 158, 533, 865
AclI	AACGTT	1 cut(s)	97
AclWI	GGATC	4 cut(s)	233, 899, 912, 972
AcoI	YGGCCR	1 cut(s)	817
AcsI	RAATTY	1 cut(s)	930
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	103, 207, 364, 460, 644
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	3 cut(s)	125, 321, 694
AluI	AGCT	3 cut(s)	125, 321, 694
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	2 cut(s)	264, 794
AlwI	GGATC	4 cut(s)	233, 899, 912, 972
Ama87I	CYCGRG	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	839
AoxI	GGCC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	983
ApoI	RAATTY	1 cut(s)	930
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	3 cut(s)	464, 493, 954
AspA2I	CCTAGG	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	375
AvrII	CCTAGG	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	904
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	2 cut(s)	383, 467
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	5 cut(s)	407, 411, 828, 895, 986
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	631
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	264, 794
BfaI	CTAG	3 cut(s)	275, 741, 968
BfmI	CTRYAG	3 cut(s)	169, 211, 484
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	1 cut(s)	984
BlnI	CCTAGG	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	985
Bme1390I	CCNGG	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	12, 906
BmrFI	CCNGG	1 cut(s)	631
BpiI	GAAGAC	2 cut(s)	383, 467
Bpu14I	TTCGAA	1 cut(s)	93
Bsa29I	ATCGAT	2 cut(s)	86, 411
BsaAI	YACGTR	2 cut(s)	262, 700
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	264, 794
BsaJI	CCNNGG	2 cut(s)	188, 274
BsaWI	WCCGGW	1 cut(s)	839
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse118I	RCCGGY	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	631
BseCI	ATCGAT	2 cut(s)	86, 411
BseDI	CCNNGG	2 cut(s)	188, 274
BseGI	GGATG	1 cut(s)	422
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	995
Bsh1285I	CGRYCG	2 cut(s)	86, 981
BshFI	GGCC	1 cut(s)	819
BshNI	GGYRCC	1 cut(s)	10
BshVI	ATCGAT	2 cut(s)	86, 411
BsiEI	CGRYCG	2 cut(s)	86, 981
BsiHKAI	GWGCWC	1 cut(s)	668
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	59, 840
BsmAI	GTCTC	2 cut(s)	264, 794
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	819
Bso31I	GGTCTC	2 cut(s)	264, 794
BsoBI	CYCGRG	1 cut(s)	375
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp13I	TCCGGA	1 cut(s)	839
Bsp143I	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	4 cut(s)	110, 158, 533, 865
BspANI	GGCC	1 cut(s)	819
BspCNI	CTCAG	1 cut(s)	790
BspDI	ATCGAT	2 cut(s)	86, 411
BspEI	TCCGGA	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	12, 906
BspPI	GGATC	4 cut(s)	233, 899, 912, 972
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	2 cut(s)	264, 794
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	188, 274
BssMI	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	188, 274
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	2 cut(s)	249, 654
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstBAI	YACGTR	2 cut(s)	262, 700
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	3 cut(s)	506, 568, 777
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	8 cut(s)	86, 90, 241, 340, 858, 907, 967, 981
BstMAI	GTCTC	2 cut(s)	264, 794
BstMBI	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
BstMCI	CGRYCG	2 cut(s)	86, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	588, 700
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	3 cut(s)	169, 211, 484
BstSNI	TACGTA	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	995
BstV2I	GAAGAC	2 cut(s)	383, 467
BstX2I	RGATCY	2 cut(s)	904, 964
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	2 cut(s)	904, 964
Bsu15I	ATCGAT	2 cut(s)	86, 411
BsuRI	GGCC	1 cut(s)	819
BsuTUI	ATCGAT	2 cut(s)	86, 411
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	58
ClaI	ATCGAT	2 cut(s)	86, 411
CviAII	CATG	2 cut(s)	189, 248
CviJI	RGCY	9 cut(s)	125, 193, 308, 321, 483, 558, 694, 819, 986
CviKI_1	RGCY	9 cut(s)	125, 193, 308, 321, 483, 558, 694, 819, 986
DdeI	CTNAG	3 cut(s)	506, 568, 777
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	8 cut(s)	85, 89, 240, 339, 857, 906, 966, 980
DpnII	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
EaeI	YGGCCR	1 cut(s)	817
Eam1104I	CTCTTC	2 cut(s)	249, 654
EarI	CTCTTC	2 cut(s)	249, 654
Eco105I	TACGTA	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	188, 274
Eco31I	GGTCTC	2 cut(s)	264, 794
Eco88I	CYCGRG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	188, 274
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	188, 274
FaeI	CATG	2 cut(s)	192, 251
FalI	AAGNNNNNCTT	4 cut(s)	481, 513, 942, 974
FatI	CATG	2 cut(s)	188, 247
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	1 cut(s)	984
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	984
FspBI	CTAG	3 cut(s)	275, 741, 968
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	819
HapII	CCGG	2 cut(s)	59, 840
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	192, 251
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	79, 364, 446, 640
HpaII	CCGG	2 cut(s)	59, 840
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	372, 895
Hpy188I	TCNGA	4 cut(s)	37, 396, 451, 670
Hpy188III	TCNNGA	6 cut(s)	248, 377, 457, 476, 779, 840
Hpy8I	GTNNAC	2 cut(s)	372, 895
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	3 cut(s)	97, 261, 699
HpyCH4V	TGCA	2 cut(s)	599, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	588, 700
HpyF3I	CTNAG	3 cut(s)	506, 568, 777
HpySE526I	ACGT	3 cut(s)	97, 261, 699
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	192, 251
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	839
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
LmnI	GCTCC	2 cut(s)	579, 671
Lsp1109I	GCAGC	1 cut(s)	995
MaeI	CTAG	3 cut(s)	275, 741, 968
MaeII	ACGT	3 cut(s)	97, 261, 699
MalI	GATC	8 cut(s)	85, 89, 240, 339, 857, 906, 966, 980
MboI	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
MboII	GAAGA	9 cut(s)	28, 31, 82, 236, 383, 472, 489, 664, 671
MflI	RGATCY	2 cut(s)	904, 964
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	5 cut(s)	132, 161, 644, 930, 954
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	60, 419
MnlI	CCTC	4 cut(s)	252, 375, 429, 838
MroI	TCCGGA	1 cut(s)	839
MroXI	GAANNNNTTC	3 cut(s)	464, 493, 954
MseI	TTAA	2 cut(s)	647, 705
MslI	CAYNNNNRTG	1 cut(s)	919
MspI	CCGG	2 cut(s)	59, 840
MspR9I	CCNGG	1 cut(s)	631
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	588, 700
NarI	GGCGCC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
NlaIII	CATG	2 cut(s)	192, 251
NlaIV	GGNNCC	2 cut(s)	12, 906
NmeAIII	GCCGAG	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	375
PagI	TCATGA	1 cut(s)	247
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	3 cut(s)	464, 493, 954
PfeI	GAWTC	3 cut(s)	79, 364, 640
PkrI	GCNGC	1 cut(s)	985
Ple19I	CGATCG	2 cut(s)	86, 981
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	2 cut(s)	262, 700
PsiI	TTATAA	1 cut(s)	830
Psp1406I	AACGTT	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	12, 906
PsuI	RGATCY	2 cut(s)	904, 964
PvuI	CGATCG	2 cut(s)	86, 981
RseI	CAYNNNNRTG	1 cut(s)	919
SaqAI	TTAA	2 cut(s)	647, 705
SatI	GCNGC	1 cut(s)	984
Sau3AI	GATC	8 cut(s)	83, 87, 238, 337, 855, 904, 964, 978
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	1 cut(s)	668
SfcI	CTRYAG	3 cut(s)	169, 211, 484
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	93
SlaI	CTCGAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	919
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SnaBI	TACGTA	1 cut(s)	262
Sse9I	AATT	5 cut(s)	132, 161, 644, 930, 954
SsiI	CCGC	4 cut(s)	110, 158, 533, 865
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	275, 741, 968
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	2 cut(s)	188, 274
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	3 cut(s)	100, 264, 702
TaqI	TCGA	7 cut(s)	82, 86, 93, 121, 376, 411, 546
TasI	AATT	5 cut(s)	132, 161, 644, 930, 954
TfiI	GAWTC	3 cut(s)	79, 364, 640
Tru1I	TTAA	2 cut(s)	647, 705
Tru9I	TTAA	2 cut(s)	647, 705
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	983
TspDTI	ATGAA	7 cut(s)	107, 236, 440, 564, 672, 771, 963
TspRI	CASTG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	930
XhoI	CTCGAG	1 cut(s)	375
XmaJI	CCTAGG	1 cut(s)	274
XmnI	GAANNNNTTC	3 cut(s)	464, 493, 954
XspI	CTAG	3 cut(s)	275, 741, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.