FvH4_1g02012

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
1058916 .. 1060954
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02012.t1

Sequence Viewer

Length: 1557 bp
ATGGGTAGCGGGCAGTCACTTCTCTCTGTATTTGCCCCTAACATGAGAAATAAGAGGATAGAATCCAAGAGACGAAGAACAACGGCGGTCGTGGACGTCGTGGAAGAGATGATTCAGCCAGACGCGGTTGCCTCCGGCTGTCAAAAACGTAAAAGAGGAAGAGGGCCTGACGACGACGCTTTCGAGGAGGAAAGCAATAAGAGAACCAAACATAATATCTTTGATATCGTCGACGAAGGTCGAAAAATTCACCAAGCCATGAGGCGGCTCATGTCTGTCGTAGATGTTGATAGTACGCTTGAAGATCTGATAAGGTTGAGCAACGATGAGGTGGAGATCAATCAGGCCAAGTGCGTCGAGTATTTGAACAAGACACATGACCGGATCATTGAGTTGCAACAAAAAAAGAGTTTGAAAAAAAGAAAAGCAAATTGGTCAGAGCTTCCCAATGAGCTTCTGGAGTCGATCTTAAAAAAGCTTATACCATCTGAATTCGACATGGTTGGCTTTAAAAATATCCGACATTTCAAAGCCGTATGTCAATCTTGGAGAGCCGCAGCAAAATCGTATAGCTCATACGTTATGTTGCCTCAGACTCCATGTCTCTTGCTTCACGAACAAACTTACTCCCTCTTTGATCCCGTTGGAAAGAAGGTGCACGAAATAAGTCACAAACACTTTCCTCATGCCTCATTGGTTGGTTCATCATACGGGTGGATTGTTATGTTTTACGAAGACGATTATTTACAAGAATCAAAAGCACATCTCTTCAACCCGATCACAAGAGTCACCATTCCGATTCCGGGCATAGATGCTCTTCCTGACGGAGGTAAATCATTACCTTCTAGAGCTATCATTTCATCCAATCCCTCCTTCAACAACAACTTTGTTGTGGTAGTGGAATATGGACAAGGACTAGCATTAGCATACTACAAACATGGAGAAAAAAGCATGTCCTGGACAATGTTGACAGATGATTACGGTGATGAGGGATTCGTGTTTCATGATGACCTTTTAGTGGCATCATCGGACAAGAGTTCTACAGCTGTTTGGGACTTCAAGGAATACCCTCCTTTACAACGTAGCCCTAGCCCTATTGATGAAGAACCTCCTGCAAGAAATCGAGTTACCTATTTAACGAAGTCATTGACGGGTGAGATCTTACGTCTCGGAAAAACGGGCGGAGACAAGGATAAGTACGAGACTATAAACTTTCGCGTGGAAAAGGTAAACTTAGCAGAAAACAAATGGGAGATTCTGCAAAGTTTAGGCGACCAAAGTTTATTCTTGTTTACCCAGTTCGACGAATGGCAACTAATATCCTTGCCGAACCCGTGTTTCTTAGGATGTGAAAAGAACTCGATCTACTTCCGAACAAGAGAATTGAACAGGTATGCAATATATAACCTTGAAAAAGGAAAAGTAGAAAGCATGGGTGAAGAAAGTGTCATTATAAAGTCGTTTGGTGAAGATGTAAATTTATATTGGTGTTCTGAACCTTTGTGGATTGTTCCTAACCCATGGATGGACACCAGGTTAGAGAGAAATCCCTGCTAG

Protein Analysis

519

Amino Acids

59.44

Weight (kDa)

6.12

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 212 - 459 2.5e-34 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1454
AatII GACGTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 125, 1218
AciI CCGC 6 cut(s) 9, 86, 125, 265, 555, 1182
AclWI GGATC 2 cut(s) 392, 632
AcsI RAATTY 3 cut(s) 246, 491, 1477
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 295, 1199
AfiI CCNNNNNNNGG 5 cut(s) 264, 803, 827, 1018, 1525
AgsI TTSAA 9 cut(s) 302, 367, 415, 529, 772, 877, 1060, 1387, 1412
AhdI GACNNNNNGTC 1 cut(s) 600
AjnI CCWGG 2 cut(s) 956, 1532
AjuI GAANNNNNNNTTGG 4 cut(s) 415, 447, 857, 889
AluBI AGCT 6 cut(s) 442, 454, 478, 573, 851, 1046
AluI AGCT 6 cut(s) 442, 454, 478, 573, 851, 1046
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 5 cut(s) 64, 608, 1172, 1179, 1196
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 2 cut(s) 392, 632
AoxI GGCC 2 cut(s) 164, 345
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 3 cut(s) 246, 491, 1477
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 6 cut(s) 242, 781, 995, 1166, 1448, 1478
BaeGI GKGCMC 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 1 cut(s) 569
BccI CCATC 2 cut(s) 493, 1519
BceAI ACGGC 2 cut(s) 99, 518
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BciT130I CCWGG 2 cut(s) 958, 1534
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 5 cut(s) 64, 608, 1172, 1179, 1196
BfaI CTAG 4 cut(s) 846, 917, 1089, 1555
BfmI CTRYAG 1 cut(s) 1041
BglII AGATCT 2 cut(s) 304, 1158
BisI GCNGC 3 cut(s) 266, 555, 558
BlsI GCNGC 3 cut(s) 267, 556, 559
Bme1390I CCNGG 3 cut(s) 804, 958, 1534
BmeRI GACNNNNNGTC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 3 cut(s) 804, 958, 1534
BmrI ACTGGG 1 cut(s) 1291
BmsI GCATC 2 cut(s) 802, 1031
BmuI ACTGGG 1 cut(s) 1291
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 1520
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 803, 827, 1018, 1525
Bse1I ACTGG 1 cut(s) 1297
BseBI CCWGG 2 cut(s) 958, 1534
BseDI CCNNGG 1 cut(s) 1520
BseGI GGATG 3 cut(s) 860, 1352, 1530
BseLI CCNNNNNNNGG 5 cut(s) 264, 803, 827, 1018, 1525
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 1297
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 1 cut(s) 569
Bsh1236I CGCG 2 cut(s) 125, 1218
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 166, 347
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 660
BsiSI CCGG 3 cut(s) 135, 382, 803
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 5 cut(s) 264, 803, 827, 1018, 1525
BsmAI GTCTC 5 cut(s) 64, 608, 1172, 1179, 1196
BsmBI CGTCTC 2 cut(s) 64, 1172
BsmFI GGGAC 1 cut(s) 1067
BsnI GGCC 2 cut(s) 166, 347
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
Bsp19I CCATGG 1 cut(s) 1520
BspACI CCGC 6 cut(s) 9, 86, 125, 265, 555, 1182
BspANI GGCC 2 cut(s) 166, 347
BspCNI CTCAG 1 cut(s) 604
BspFNI CGCG 2 cut(s) 125, 1218
BspHI TCATGA 1 cut(s) 1003
BspPI GGATC 2 cut(s) 392, 632
BspQI GCTCTTC 1 cut(s) 822
BsrI ACTGG 1 cut(s) 1297
BssECI CCNNGG 1 cut(s) 1520
BssMI GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 1520
Bst2UI CCWGG 2 cut(s) 958, 1534
Bst4CI ACNGT 1 cut(s) 983
Bst6I CTCTTC 4 cut(s) 99, 154, 773, 822
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 591, 1234, 1342
BstDSI CCRYGG 1 cut(s) 1520
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 860, 1352, 1530
BstFNI CGCG 2 cut(s) 125, 1218
BstKTI GATC 8 cut(s) 307, 339, 387, 468, 640, 780, 1161, 1365
BstMAI GTCTC 5 cut(s) 64, 608, 1172, 1179, 1196
BstMBI GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
BstMCI CGRYCG 1 cut(s) 90
BstNI CCWGG 2 cut(s) 958, 1534
BstNSI RCATGY 1 cut(s) 955
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 3 cut(s) 802, 956, 1532
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 2 cut(s) 125, 1218
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 2 cut(s) 304, 1158
BstYI RGATCY 2 cut(s) 304, 1158
BsuRI GGCC 2 cut(s) 166, 347
BtgI CCRYGG 1 cut(s) 1520
BtsCI GGATG 3 cut(s) 860, 1352, 1530
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 1 cut(s) 1003
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 3 cut(s) 131, 185, 343
CsiI ACCWGGT 1 cut(s) 1532
Csp6I GTAC 2 cut(s) 294, 1198
CviQI GTAC 2 cut(s) 294, 1198
DdeI CTNAG 3 cut(s) 591, 1234, 1342
DpnI GATC 8 cut(s) 306, 338, 386, 467, 639, 779, 1160, 1364
DpnII GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
DraI TTTAAA 1 cut(s) 511
DriI GACNNNNNGTC 1 cut(s) 600
Eam1104I CTCTTC 4 cut(s) 99, 154, 773, 822
Eam1105I GACNNNNNGTC 1 cut(s) 600
EarI CTCTTC 4 cut(s) 99, 154, 773, 822
EciI GGCGGA 1 cut(s) 1197
Eco130I CCWWGG 1 cut(s) 1520
Eco32I GATATC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 956, 1532
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 1520
ErhI CCWWGG 1 cut(s) 1520
Esp3I CGTCTC 2 cut(s) 64, 1172
FalI AAGNNNNNCTT 2 cut(s) 1217, 1249
FaqI GGGAC 1 cut(s) 1067
FauI CCCGC 1 cut(s) 2
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 266, 555, 558
FokI GGATG 3 cut(s) 847, 1359, 1537
Fsp4HI GCNGC 3 cut(s) 266, 555, 558
FspBI CTAG 4 cut(s) 846, 917, 1089, 1555
GluI GCNGC 3 cut(s) 266, 555, 558
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 2 cut(s) 166, 347
HapII CCGG 3 cut(s) 135, 382, 803
HgaI GACGC 3 cut(s) 131, 185, 343
Hin1I GRCGYC 1 cut(s) 96
HincII GTYRAC 2 cut(s) 232, 969
HindII GTYRAC 2 cut(s) 232, 969
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 9 cut(s) 62, 112, 461, 595, 752, 786, 799, 993, 1255
HpaII CCGG 3 cut(s) 135, 382, 803
HphI GGTGA 6 cut(s) 242, 781, 995, 1166, 1448, 1478
Hpy166II GTNNAC 6 cut(s) 94, 232, 658, 969, 1231, 1293
Hpy188III TCNNGA 5 cut(s) 458, 614, 821, 846, 1004
Hpy8I GTNNAC 6 cut(s) 94, 232, 658, 969, 1231, 1293
Hpy99I CGWCG 7 cut(s) 101, 176, 179, 233, 236, 359, 1307
HpyAV CCTTC 4 cut(s) 230, 646, 852, 883
HpyCH4III ACNGT 1 cut(s) 983
HpyCH4IV ACGT 5 cut(s) 96, 148, 579, 1081, 1165
HpyCH4V TGCA 5 cut(s) 397, 658, 1115, 1261, 1397
HpyF3I CTNAG 3 cut(s) 591, 1234, 1342
HpySE526I ACGT 5 cut(s) 96, 148, 579, 1081, 1165
Hsp92I GRCGYC 1 cut(s) 96
Kzo9I GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
LguI GCTCTTC 1 cut(s) 822
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 2 cut(s) 802, 1031
MabI ACCWGGT 1 cut(s) 1532
MaeI CTAG 4 cut(s) 846, 917, 1089, 1555
MaeII ACGT 5 cut(s) 96, 148, 579, 1081, 1165
MaeIII GTNAC 4 cut(s) 15, 668, 787, 1126
MalI GATC 8 cut(s) 306, 338, 386, 467, 639, 779, 1160, 1364
MboI GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
MflI RGATCY 2 cut(s) 304, 1158
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 5 cut(s) 246, 430, 491, 1382, 1477
MlyI GAGTC 3 cut(s) 470, 589, 795
MmeI TCCRAC 2 cut(s) 544, 625
MseI TTAA 3 cut(s) 470, 510, 1136
MslI CAYNNNNRTG 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 3 cut(s) 135, 382, 803
MspR9I CCNGG 3 cut(s) 804, 958, 1534
MvaI CCWGG 2 cut(s) 958, 1534
MvnI CGCG 2 cut(s) 125, 1218
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 1520
NdeII GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
NmuCI GTSAC 3 cut(s) 15, 668, 787
NspI RCATGY 1 cut(s) 955
PagI TCATGA 1 cut(s) 1003
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 180
PfeI GAWTC 6 cut(s) 62, 112, 752, 799, 993, 1255
PfoI TCCNGGA 1 cut(s) 956
PkrI GCNGC 3 cut(s) 267, 556, 559
PleI GAGTC 3 cut(s) 469, 589, 794
PpsI GAGTC 3 cut(s) 469, 589, 794
PshAI GACNNNNGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 1454
Psp6I CCWGG 2 cut(s) 956, 1532
PspGI CCWGG 2 cut(s) 956, 1532
PspPI GGNCC 1 cut(s) 164
PsrI GAACNNNNNNTAC 2 cut(s) 1349, 1381
PsuI RGATCY 2 cut(s) 304, 1158
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 2 cut(s) 295, 1199
RsaNI GTAC 2 cut(s) 294, 1198
RseI CAYNNNNRTG 1 cut(s) 712
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 3 cut(s) 470, 510, 1136
SatI GCNGC 3 cut(s) 266, 555, 558
Sau3AI GATC 8 cut(s) 304, 336, 384, 465, 637, 777, 1158, 1362
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 3 cut(s) 470, 589, 795
ScrFI CCNGG 3 cut(s) 804, 958, 1534
SduI GDGCHC 1 cut(s) 660
SexAI ACCWGGT 1 cut(s) 1532
SfaNI GCATC 2 cut(s) 802, 1031
SfcI CTRYAG 1 cut(s) 1041
SgrDI CGTCGACG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 712
Sse9I AATT 5 cut(s) 246, 430, 491, 1382, 1477
SsiI CCGC 6 cut(s) 9, 86, 125, 265, 555, 1182
SspMI CTAG 4 cut(s) 846, 917, 1089, 1555
StyD4I CCNGG 3 cut(s) 802, 956, 1532
StyI CCWWGG 1 cut(s) 1520
TaaI ACNGT 1 cut(s) 983
TaiI ACGT 5 cut(s) 99, 151, 582, 1084, 1168
TaqI TCGA 9 cut(s) 183, 231, 241, 357, 464, 495, 1123, 1302, 1361
TasI AATT 5 cut(s) 246, 430, 491, 1382, 1477
TauI GCSGC 2 cut(s) 268, 557
TfiI GAWTC 6 cut(s) 62, 112, 752, 799, 993, 1255
Tru1I TTAA 3 cut(s) 470, 510, 1136
Tru9I TTAA 3 cut(s) 470, 510, 1136
TseFI GTSAC 3 cut(s) 15, 668, 787
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 3 cut(s) 15, 668, 787
TspDTI ATGAA 4 cut(s) 693, 849, 992, 1116
TspGWI ACGGA 1 cut(s) 840
VneI GTGCAC 1 cut(s) 656
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 3 cut(s) 246, 491, 1477
XbaI TCTAGA 1 cut(s) 845
XceI RCATGY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 4 cut(s) 846, 917, 1089, 1555
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.