AT2G03560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Forward (+)
1079639 .. 1080826
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03560.1

Sequence Viewer

Length: 1188 bp
ATGGGTATGACAACCGATTCGATGAAGAAAGAGGAGACACAAAAAATGTCTGAGAATCATGATTGGTCCAAGCTTTGTCCTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCTAGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTCCGTTTGGAAAACATGCGTAAAGCGGCCTCTGCGTCCATGGCGGATCATATATAGAGCAAAGTATTATATTAGTACTTCATTGATGTTGTTCGATCCCGACGAAGACAAGATTTATAAGAATCTTGTCGGAGTTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGCAGATTCTCGTCTTGATTTCTATATTGTTAACCTGTTAACGGGCAAAAGGATCAATCTTCCACCAATGGAGTCTAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATATTTTTACAAGTCGAGGTACATTTGCTTTGACAATTGTAATTCTATTCGTATAAGTGAGAAAGAAGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGACGGGAGATTATTTCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTCGTGGTGTTGGAATAGGAAGTGGACTAAACCTGGTTATTTGGATTTGGCTTATAAGAACAACAAGCTTTATATCTATAATACCGATAACTACATCAAGATTTTTGATTTCTCTGGAGATTACCCTAAAGAAGATATCGAAAATAACCCGTATCATAATCGTCCTCTTCAGTACATTCGGGGACCAGGGGAAGTCCTTTTGAGCAAGAGAATAGCGATTCAGAAATCGGGAGAGGTTTTGATCATCTTGAGAGTTATAAAAGGTTATAACTTTTTGTTTTGGATCTTTAAAATGAATTTTGAGCGTAGAAAATGGGAAAGAGTAGATTCTATTGGAGATGATGAGATGATTATCTTCGGTCATGGGCTTACAGTAAGAGCACCGGTTCAAGATATTGGTGATGGAGTCAAGAGTGGTTCAATCTGTTTCGTTGAATATGACCGTCAGCCATTTTCCGGTGTCTTCGATCTTGCCACTGGTAAAGTTACAAGGCCAAATAAATTTCGTTATCATATGAGTTATAGTCATTGGTTTCTTCCAGGATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

46.82

Weight (kDa)

9.23

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 83 - 368 1.9e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 276, 690, 893, 903
AciI CCGC 2 cut(s) 184, 202
AclWI GGATC 4 cut(s) 212, 248, 401, 926
AcsI RAATTY 3 cut(s) 420, 931, 1136
AcuI CTGAAG 1 cut(s) 788
AfaI GTAC 4 cut(s) 158, 235, 476, 809
AfiI CCNNNNNNNGG 2 cut(s) 382, 1091
AgeI ACCGGT 1 cut(s) 1018
AgsI TTSAA 3 cut(s) 1025, 1056, 1070
AjnI CCWGG 3 cut(s) 667, 820, 1174
AluBI AGCT 7 cut(s) 73, 108, 114, 306, 321, 545, 703
AluI AGCT 7 cut(s) 73, 108, 114, 306, 321, 545, 703
Alw21I GWGCWC 3 cut(s) 116, 433, 1018
Alw26I GTCTC 1 cut(s) 29
Alw44I GTGCAC 1 cut(s) 429
AlwI GGATC 4 cut(s) 212, 248, 401, 926
AoxI GGCC 2 cut(s) 185, 1127
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 3 cut(s) 420, 931, 1136
ArsI GACNNNNNNTTYG 1 cut(s) 33
AsiGI ACCGGT 1 cut(s) 1018
AspS9I GGNCC 2 cut(s) 66, 818
AsuHPI GGTGA 1 cut(s) 1046
AsuII TTCGAA 1 cut(s) 528
AsuNHI GCTAGC 1 cut(s) 317
AvaII GGWCC 2 cut(s) 66, 818
BaeGI GKGCMC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 270, 1090
Bbv12I GWGCWC 3 cut(s) 116, 433, 1018
BbvI GCAGC 1 cut(s) 554
BccI CCATC 2 cut(s) 334, 1031
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 3 cut(s) 669, 822, 1176
BclI TGATCA 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 119, 318
BisI GCNGC 2 cut(s) 185, 543
BlsI GCNGC 2 cut(s) 186, 544
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 3 cut(s) 669, 822, 1176
Bme18I GGWCC 2 cut(s) 66, 818
BmgT120I GGNCC 2 cut(s) 66, 818
BmiI GGNNCC 1 cut(s) 819
BmrFI CCNGG 3 cut(s) 669, 822, 1176
BmtI GCTAGC 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 270, 1090
BpmI CTGGAG 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 130, 904
BsaBI GATNNNNATC 1 cut(s) 986
BsaJI CCNNGG 2 cut(s) 197, 821
BsaWI WCCGGW 2 cut(s) 1018, 1091
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 1091
Bse118I RCCGGY 1 cut(s) 1018
Bse1I ACTGG 2 cut(s) 335, 1117
Bse8I GATNNNNATC 1 cut(s) 986
BseBI CCWGG 3 cut(s) 669, 822, 1176
BseDI CCNNGG 2 cut(s) 197, 821
BseJI GATNNNNATC 1 cut(s) 986
BseLI CCNNNNNNNGG 2 cut(s) 382, 1091
BseMII CTCAG 2 cut(s) 42, 162
BseNI ACTGG 2 cut(s) 335, 1117
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 1 cut(s) 554
BshFI GGCC 2 cut(s) 187, 1129
BshTI ACCGGT 1 cut(s) 1018
BsiHKAI GWGCWC 3 cut(s) 116, 433, 1018
BsiSI CCGG 2 cut(s) 1019, 1092
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 2 cut(s) 382, 1091
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 2 cut(s) 187, 1129
Bsp119I TTCGAA 1 cut(s) 528
Bsp1286I GDGCHC 3 cut(s) 116, 433, 1018
Bsp143I GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 2 cut(s) 184, 202
BspANI GGCC 2 cut(s) 187, 1129
BspCNI CTCAG 2 cut(s) 43, 161
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 819
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 4 cut(s) 212, 248, 401, 926
BspT104I TTCGAA 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 1018
BsrI ACTGG 2 cut(s) 335, 1117
BssAI RCCGGY 1 cut(s) 1018
BssECI CCNNGG 2 cut(s) 197, 821
BssMI GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 669, 822, 1176
Bst4CI ACNGT 2 cut(s) 1009, 1079
Bst6I CTCTTC 1 cut(s) 807
BstBI TTCGAA 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 51, 148, 1185
BstDSI CCRYGG 1 cut(s) 197
BstKTI GATC 7 cut(s) 99, 207, 256, 396, 879, 921, 1105
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstNI CCWGG 3 cut(s) 669, 822, 1176
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 667, 820, 1174
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 2 cut(s) 270, 1090
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BsuRI GGCC 2 cut(s) 187, 1129
BtgI CCRYGG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 1110
Cac8I GCNNGC 1 cut(s) 319
CciI TCATGA 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 1018
Cfr13I GGNCC 2 cut(s) 66, 818
CseI GACGC 1 cut(s) 182
CsiI ACCWGGT 1 cut(s) 667
Csp6I GTAC 4 cut(s) 157, 234, 475, 808
CspAI ACCGGT 1 cut(s) 1018
CviAII CATG 4 cut(s) 59, 174, 198, 998
CviQI GTAC 4 cut(s) 157, 234, 475, 808
DdeI CTNAG 3 cut(s) 51, 148, 1185
DpnI GATC 7 cut(s) 98, 206, 255, 395, 878, 920, 1104
DpnII GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
DraI TTTAAA 1 cut(s) 925
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 66, 818
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 667, 820, 1174
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 4 cut(s) 62, 177, 201, 1001
FaqI GGGAC 1 cut(s) 831
FatI CATG 4 cut(s) 58, 173, 197, 997
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 2 cut(s) 185, 543
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 185, 543
FspBI CTAG 2 cut(s) 119, 318
GluI GCNGC 2 cut(s) 185, 543
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 2 cut(s) 187, 1129
HapII CCGG 2 cut(s) 1019, 1092
HgaI GACGC 1 cut(s) 182
Hin1II CATG 4 cut(s) 62, 177, 201, 1001
HincII GTYRAC 2 cut(s) 373, 381
HindII GTYRAC 2 cut(s) 373, 381
HindIII AAGCTT 3 cut(s) 71, 106, 701
HpaI GTTAAC 2 cut(s) 373, 381
HpaII CCGG 2 cut(s) 1019, 1092
HphI GGTGA 1 cut(s) 1046
Hpy166II GTNNAC 5 cut(s) 373, 381, 431, 615, 660
Hpy188I TCNGA 5 cut(s) 52, 151, 290, 298, 858
Hpy8I GTNNAC 5 cut(s) 373, 381, 431, 615, 660
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 1009, 1079
HpyCH4V TGCA 2 cut(s) 431, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 3 cut(s) 51, 148, 1185
Hsp92II CATG 4 cut(s) 62, 177, 201, 1001
Ksp22I TGATCA 1 cut(s) 876
KspAI GTTAAC 2 cut(s) 373, 381
Kzo9I GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
Lsp1109I GCAGC 1 cut(s) 554
MabI ACCWGGT 1 cut(s) 667
MaeI CTAG 2 cut(s) 119, 318
MaeIII GTNAC 1 cut(s) 1120
MalI GATC 7 cut(s) 98, 206, 255, 395, 878, 920, 1104
MboI GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
MboII GAAGA 8 cut(s) 37, 275, 392, 779, 794, 982, 1090, 1163
MfeI CAATTG 1 cut(s) 490
MflI RGATCY 1 cut(s) 918
MhlI GDGCHC 3 cut(s) 116, 433, 1018
MluCI AATT 6 cut(s) 138, 420, 490, 496, 931, 1136
MlyI GAGTC 2 cut(s) 422, 1050
MmeI TCCRAC 2 cut(s) 268, 626
MnlI CCTC 6 cut(s) 25, 198, 465, 558, 810, 862
MseI TTAA 4 cut(s) 372, 380, 597, 924
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 1019, 1092
MspR9I CCNGG 3 cut(s) 669, 822, 1176
MunI CAATTG 1 cut(s) 490
MvaI CCWGG 3 cut(s) 669, 822, 1176
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NcoI CCATGG 1 cut(s) 197
NdeI CATATG 1 cut(s) 1149
NdeII GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 4 cut(s) 62, 177, 201, 1001
NlaIV GGNNCC 1 cut(s) 819
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 1 cut(s) 528
PagI TCATGA 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 8 cut(s) 17, 55, 280, 347, 530, 635, 853, 962
PfoI TCCNGGA 1 cut(s) 1174
PinAI ACCGGT 1 cut(s) 1018
PkrI GCNGC 2 cut(s) 186, 544
PleI GAGTC 2 cut(s) 421, 1049
PpsI GAGTC 2 cut(s) 421, 1049
PsiI TTATAA 4 cut(s) 276, 690, 893, 903
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 667, 820, 1174
PspGI CCWGG 3 cut(s) 667, 820, 1174
PspN4I GGNNCC 1 cut(s) 819
PspPI GGNCC 2 cut(s) 66, 818
PsuI RGATCY 1 cut(s) 918
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 4 cut(s) 158, 235, 476, 809
RsaNI GTAC 4 cut(s) 157, 234, 475, 808
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 4 cut(s) 372, 380, 597, 924
SatI GCNGC 2 cut(s) 185, 543
Sau3AI GATC 7 cut(s) 96, 204, 253, 393, 876, 918, 1102
Sau96I GGNCC 2 cut(s) 66, 818
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 2 cut(s) 422, 1050
ScrFI CCNGG 3 cut(s) 669, 822, 1176
SduI GDGCHC 3 cut(s) 116, 433, 1018
SexAI ACCWGGT 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 528
SinI GGWCC 2 cut(s) 66, 818
SmlI CTYRAG 2 cut(s) 109, 883
SmoI CTYRAG 2 cut(s) 109, 883
Sse9I AATT 6 cut(s) 138, 420, 490, 496, 931, 1136
SsiI CCGC 2 cut(s) 184, 202
SspI AATATT 1 cut(s) 458
SspMI CTAG 2 cut(s) 119, 318
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 667, 820, 1174
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 1009, 1079
TaqI TCGA 7 cut(s) 20, 102, 252, 470, 528, 774, 1101
TaqII GACCGA 1 cut(s) 983
TasI AATT 6 cut(s) 138, 420, 490, 496, 931, 1136
TatI WGTACW 2 cut(s) 233, 807
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 8 cut(s) 17, 55, 280, 347, 530, 635, 853, 962
Tru1I TTAA 4 cut(s) 372, 380, 597, 924
Tru9I TTAA 4 cut(s) 372, 380, 597, 924
TscAI CASTG 1 cut(s) 1117
TseI GCWGC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 38, 228, 944
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 1117
VneI GTGCAC 1 cut(s) 429
VpaK11BI GGWCC 2 cut(s) 66, 818
XapI RAATTY 3 cut(s) 420, 931, 1136
XbaI TCTAGA 1 cut(s) 118
XceI RCATGY 1 cut(s) 177
XspI CTAG 2 cut(s) 119, 318
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.